Browse Element(s) Details


OsAffx.1934.1.S1_at

Description gb:NM_184324.1
DB_XREF= gi:34895727
GEN=P0019D06.22
TID=OsAffx.1934.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0019D06.22 (P0019D06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0500011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04980NANA1+2333726..2336866transposon protein, putative, unclassified
LOC_Os01g04990Os.31513.1.S1_at11/111+2346870..2350304Mitochondrial carrier protein, expressed
LOC_Os01g05000OsAffx.1934.1.S1_at11/111+2352985..2353847hypothetical protein
LOC_Os01g05010Os.1625.1.S1_at11/111+2354653..2357239Mitochondrial glycoprotein, expressed
LOC_Os01g05020OsAffx.23117.1.S1_at11/111+2358601..2360616hypothetical protein
LOC_Os01g05030Os.43764.1.A1_at9/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.2.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.7.S1_x_at3/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.25967.2.S1_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05030OsAffx.24046.3.S1_x_at1/111+2361522..2364720hAT family dimerisation domain containing protein
LOC_Os01g05040OsAffx.10912.1.S1_x_at11/111+2366331..2368118hypothetical protein
LOC_Os01g05050OsAffx.10571.1.S1_at11/111+2369125..2370868Mitochondrial glycoprotein
LOC_Os01g05060Os.11429.1.S1_at11/111+2371287..2373563Mitochondrial glycoprotein, expressed
LOC_Os01g05070Os.17266.1.S1_at11/111+2375613..2379386expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1934.1.S1_at--767--10631Chr01:2353410..2353434 (25 bp)
TTCGCACAGCAGGACATGGCCCAGG
LOC_Os01g05000
OsAffx.1934.1.S1_at--1125--3451Chr01:2353431..2353455 (25 bp)
CAGGGCCTTTTCCTCCTTGACAAGG
LOC_Os01g05000
OsAffx.1934.1.S1_at--232--9851Chr01:2353506..2353530 (25 bp)
TACAAGTCCGATGAGGCTCGCGCCA
LOC_Os01g05000
OsAffx.1934.1.S1_at--477--6211Chr01:2353518..2353542 (25 bp)
GAGGCTCGCGCCACTGGGAAAAAGT
LOC_Os01g05000
OsAffx.1934.1.S1_at--692--6351Chr01:2353587..2353611 (25 bp)
GATGCCGGGAACAAGAGGACCAACC
LOC_Os01g05000
OsAffx.1934.1.S1_at--200--971Chr01:2353602..2353626 (25 bp)
AGGACCAACCAGGAGTGCCGACGGT
LOC_Os01g05000
OsAffx.1934.1.S1_at--328--5571Chr01:2353630..2353654 (25 bp)
GAAAGATCGCTGAGGATGCCGTCCA
LOC_Os01g05000
OsAffx.1934.1.S1_at--881--6211Chr01:2353679..2353703 (25 bp)
GAGGCGTGGCCAATTGCTAGTCCTA
LOC_Os01g05000
OsAffx.1934.1.S1_at--263--8891Chr01:2353706..2353730 (25 bp)
TGAGGACAACCACCAGTGCACAACC
LOC_Os01g05000
OsAffx.1934.1.S1_at--523--3251Chr01:2353726..2353750 (25 bp)
CAACCATCGGTTGTGGTCTGGAGTT
LOC_Os01g05000
OsAffx.1934.1.S1_at--319--8315Chr01:2353761..2353785 (25 bp)
GGCTACGAAGGCTTTTGCAGTGACA
LOC_Os01g05000
Target Sequence 
TTCGCACAGCAGGACATGGCCCAGGGCCTTTTCCTCCTTGACAAGGCTGCCACCGCGGGCCACAAGACAGCGGCCTACGT
GCTCGGCCTCCTCCTCTACAAGTCCGATGAGGCTCGCGCCACTGGGAAAAAGTACATCAGCCAAGTTGAGGGCGACGGTG
ATGAGGCGGCGACGACCGATGCCGGGAACAAGAGGACCAACCAGGAGTGCCGACGGTGCCGAAAGATCGCTGAGGATGCC
GTCCAGGAGGTGATGTGGAAGGTCGTTAGGAGGCGTGGCCAATTGCTAGTCCTACCTGAGGACAACCACCAGTGCACAAC
CATCGGTTGTGGTCTGGAGTTGGGATGGGAAGGCTACGAAGGCTTTTGCAGTGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis