Browse Element(s) Details


OsAffx.19382.1.S1_at

Description tigr:9639.m04192
TID=OsAffx.19382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4513011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45110NANA11+26790809..26791417hypothetical protein
LOC_Os11g45120NANA11+26801402..26803020hypothetical protein
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19382.1.S1_at--891--7911Chr11:26814650..26814674 (25 bp)
GGTTGATCATCAATGATATGCCCAA
LOC_Os11g45130
OsAffx.19382.1.S1_at--195--4371Chr11:26814671..26814695 (25 bp)
CCAACTGGGAGGAATGGGCCTTTAT
LOC_Os11g45130
OsAffx.19382.1.S1_at--295--8211Chr11:26814681..26814705 (25 bp)
GGAATGGGCCTTTATTGAAGAAGAT
LOC_Os11g45130
OsAffx.19382.1.S1_at--1127--8971Chr11:26814696..26814720 (25 bp)
TGAAGAAGATGAGATATCACTTGCA
LOC_Os11g45130
OsAffx.19382.1.S1_at--942--7651Chr11:26814740..26814764 (25 bp)
GGGATGGAACTGCTGTGGCCGAAGA
LOC_Os11g45130
OsAffx.19382.1.S1_at--256--6171Chr11:26814802..26814826 (25 bp)
GAGGATGGAACCACTGTGACGGAAA
LOC_Os11g45130
OsAffx.19382.1.S1_at--212--211Chr11:26814840..26814864 (25 bp)
ATTTCCAAGGTTGTGTGTGCTGCCC
LOC_Os11g45130
OsAffx.19382.1.S1_at--317--3211Chr11:26814845..26814869 (25 bp)
CAAGGTTGTGTGTGCTGCCCTCTTT
LOC_Os11g45130
OsAffx.19382.1.S1_at--470--6631Chr11:26814849..26814873 (25 bp)
GTTGTGTGTGCTGCCCTCTTTGAAG
LOC_Os11g45130
OsAffx.19382.1.S1_at--35--6171Chr11:26814873..26814897 (25 bp)
GAGGTTGGACATTGATAACTGCCCC
LOC_Os11g45130
OsAffx.19382.1.S1_at--493--8131Chr11:26814879..26814903 (25 bp)
GGACATTGATAACTGCCCCAAGCTG
LOC_Os11g45130
Target Sequence 
GGTTGATCATCAATGATATGCCCAACTGGGAGGAATGGGCCTTTATTGAAGAAGATGAGATATCACTTGCAGCAATGAAC
GAAGGAGGAGGGGATGGAACTGCTGTGGCCGAAGAGGAGGAGATATCACTTGCAGCAATGAATGAAGGAGGAGAGGATGG
AACCACTGTGACGGAAAAGGGGGAAGCCTCATTTCCAAGGTTGTGTGTGCTGCCCTCTTTGAAGAGGTTGGACATTGATA
ACTGCCCCAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis