Browse Element(s) Details


OsAffx.19401.1.S1_at

Description tigr:9639.m04299
TID=OsAffx.19401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4610011/11resistance protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46060OsAffx.7424.1.S1_at11/1111+27375667..27376113hypothetical protein
LOC_Os11g46070Os.52601.1.S1_at11/1111+27377785..27384128NB-ARC domain containing protein, expressed
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative
LOC_Os11g46140OsAffx.19402.1.S1_at11/1111+27421923..27424237hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19401.1.S1_at--337--891Chr11:27401642..27401666 (25 bp)
AGGCGCAAAGCCTGATCCACTGTCA
LOC_Os11g46100
OsAffx.19401.1.S1_at--142--4371Chr11:27401658..27401682 (25 bp)
CCACTGTCAACAGCCATTCTTGAGG
LOC_Os11g46100
OsAffx.19401.1.S1_at--378--5591Chr11:27401706..27401730 (25 bp)
GAAATCTTAGTTCCAGCAGGAGGAT
LOC_Os11g46100
OsAffx.19401.1.S1_at--51--5971Chr11:27401733..27401757 (25 bp)
GAGAATCTGAAGCTCCTTCGTTTCT
LOC_Os11g46100
OsAffx.19401.1.S1_at--410--4871Chr11:27401796..27401820 (25 bp)
GCTATGCCAAGCCTTGAGAGACTTG
LOC_Os11g46100
OsAffx.19401.1.S1_at--822--5971Chr11:27401813..27401837 (25 bp)
GAGACTTGAGCTACGGTTCAGGATT
LOC_Os11g46100
OsAffx.19401.1.S1_at--170--10191Chr11:27401836..27401860 (25 bp)
TTTTCGAGGGACTTTTTGGCATACA
LOC_Os11g46100
OsAffx.19401.1.S1_at--847--2311Chr11:27401877..27401901 (25 bp)
AAAGAGGTGCATCTCCGGGTAAATT
LOC_Os11g46100
OsAffx.19401.1.S1_at--446--8891Chr11:27401912..27401936 (25 bp)
TGAGGTCACCAAGTCCATCGTACAA
LOC_Os11g46100
OsAffx.19401.1.S1_at--665--6131Chr11:27402024..27402048 (25 bp)
GAGGGCACTGAGTTCATCATAGAAA
LOC_Os11g46100
OsAffx.19401.1.S1_at--563--6311Chr11:27402083..27402107 (25 bp)
GATGAAAGAGGCCACCACGTCAACC
LOC_Os11g46100
Target Sequence 
AGGCGCAAAGCCTGATCCACTGTCAACAGCCATTCTTGAGGAGAACAAGAACTACTCTGATGGGGAAATCTTAGTTCCAG
CAGGAGGATTTGAGAATCTGAAGCTCCTTCGTTTCTCTGCTCCTCTCCTGCCCTTGCTGAACTTTCAGGAGAAGGCTATG
CCAAGCCTTGAGAGACTTGAGCTACGGTTCAGGATTTTCGAGGGACTTTTTGGCATACAAAACCTGGAAATCCTAAAAGA
GGTGCATCTCCGGGTAAATTACAGAGCAGGTGAGGTCACCAAGTCCATCGTACAAAATGTGGCAACTCAAGTGAAGAAAG
AGGCCACCAAAAGTGTGGCAACTGAAGCGAATAAAGAAAATGTAGCATCTGCAACGAACAAAGAGGGCACTGAGTTCATC
ATAGAAAATGTGACACTTGAAGCAAATGAAGCTACTGCCGCGATGAAAGAGGCCACCACGTCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis