Browse Element(s) Details


OsAffx.19426.1.S1_at

Description tigr:9635.m04670
TID=OsAffx.19426.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4647011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46470OsAffx.19426.1.S1_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470OsAffx.19426.1.S1_x_at11/117+27739788..27743199hypothetical protein
LOC_Os07g46470Os.52655.1.S1_x_at2/117+27739788..27743199hypothetical protein
LOC_Os07g46480Os.46987.1.S1_x_at11/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46480Os.6791.1.S1_x_at1/117+27744614..27746004Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g46490Os.11460.1.S1_at11/117+27751108..27755611Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19426.1.S1_at--99--1751Chr07:27742987..27743011 (25 bp)
ACCTTCACCGACATGCATGCATTGA
LOC_Os07g46470
OsAffx.19426.1.S1_at--506--6331Chr07:27743010..27743034 (25 bp)
GATGCATCATACATACTCTAACTTC
LOC_Os07g46470
OsAffx.19426.1.S1_at--617--4971Chr07:27743013..27743037 (25 bp)
GCATCATACATACTCTAACTTCAGA
LOC_Os07g46470
OsAffx.19426.1.S1_at--247--9611Chr07:27743016..27743040 (25 bp)
TCATACATACTCTAACTTCAGAAGA
LOC_Os07g46470
OsAffx.19426.1.S1_at--787--2051Chr07:27743030..27743054 (25 bp)
ACTTCAGAAGAGATGCGGAGCCGAG
LOC_Os07g46470
OsAffx.19426.1.S1_at--355--6331Chr07:27743041..27743065 (25 bp)
GATGCGGAGCCGAGATTCAATCAAA
LOC_Os07g46470
OsAffx.19426.1.S1_at--225--5871Chr07:27743047..27743071 (25 bp)
GAGCCGAGATTCAATCAAACTACTT
LOC_Os07g46470
OsAffx.19426.1.S1_at--342--7411Chr07:27743107..27743131 (25 bp)
GTGATACAAAATAAACGAACTACAG
LOC_Os07g46470
OsAffx.19426.1.S1_at--465--4091Chr07:27743122..27743146 (25 bp)
CGAACTACAGATAACCTACTTGGAG
LOC_Os07g46470
OsAffx.19426.1.S1_at--354--3431Chr07:27743129..27743153 (25 bp)
CAGATAACCTACTTGGAGGAGCTTC
LOC_Os07g46470
OsAffx.19426.1.S1_at--28--931Chr07:27743145..27743169 (25 bp)
AGGAGCTTCAAATCCTAAGAAACAC
LOC_Os07g46470
Target Sequence 
ACCTTCACCGACATGCATGCATTGATGCATCATACATACTCTAACTTCAGAAGAGATGCGGAGCCGAGATTCAATCAAAC
TACTTCAGCTTCACCAAAAAGTGAAACAGAGTGGAATAAAGTGATACAAAATAAACGAACTACAGATAACCTACTTGGAG
GAGCTTCAAATCCTAAGAAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis