Browse Element(s) Details


OsAffx.19470.1.S1_at

Description tigr:9640.m00270
TID=OsAffx.19470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0355411/11Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g03580OsAffx.26199.2.S1_at11/1112+1432889..1435183hypothetical protein
LOC_Os12g03580Os.27362.1.S2_at1/1112+1432889..1435183hypothetical protein
LOC_Os12g03594Os.52665.1.S1_at11/1112+1436032..1444090F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19470.1.S1_at--391--5491Chr12:1418852..1418876 (25 bp)
GAACTTGTCGTATTTGCTCTCCAGA
LOC_Os12g03554
OsAffx.19470.1.S1_at--387--8931Chr12:1419128..1419152 (25 bp)
TGACCGTGCGGTCCGTGACAATAAT
LOC_Os12g03554
OsAffx.19470.1.S1_at--700--10391Chr12:1419682..1419706 (25 bp)
TTTTGGAGATCCTCCTTCTTGGATC
LOC_Os12g03554
OsAffx.19470.1.S1_at--521--6511Chr12:1419710..1419734 (25 bp)
GATATCAGCTGGGTTCCTGACATGT
LOC_Os12g03554
OsAffx.19470.1.S1_at--935--9711Chr12:1419767..1419791 (25 bp)
TCAACGTTATGGACCCCACGATATA
LOC_Os12g03554
OsAffx.19470.1.S1_at--1139--2131Chr12:1419804..1419828 (25 bp)
ACAGTTGCTCACATTTTGCCAGGAA
LOC_Os12g03554
OsAffx.19470.1.S1_at--1155--5191Chr12:1419826..1419850 (25 bp)
GAATTTCTTGAACCATTTCGGTCGT
LOC_Os12g03554
OsAffx.19470.1.S1_at--387--9411Chr12:1420627..1420646 (20 bp)
TCGTGAGGTTTCTTTGCAGGCAGCT
LOC_Os12g03554
OsAffx.19470.1.S1_at--806--891Chr12:1420648..1420672 (25 bp)
AGGCTGCCGTTTCTCAGAATCTAGA
LOC_Os12g03554
OsAffx.19470.1.S1_at--697--5251Chr12:1420664..1420688 (25 bp)
GAATCTAGAGTTTCTGCTTCCAACC
LOC_Os12g03554
OsAffx.19470.1.S1_at--171--7451Chr12:1420707..1420731 (25 bp)
GTGTACAGTGGACCTCATCATTGGA
LOC_Os12g03554
Target Sequence 
GAACTTGTCGTATTTGCTCTCCAGAGGAGGAACATCAAGTATTGTGATATTTATGTAACATGGTTAATTCCAATGGAATA
TGAGCGTATGGATGAACTTATTGACCGTGCGGTCCGTGACAATAATAATGACCTTTTCTATTATGTGAACCTTCCCCCAG
AATTGATAAACCCTTATAAGGATACATGGGTAACTTTTCTAAGTGATTTCTCGAGATATATCATACACCAACTATTGCAA
TATTTGAATGATACTTTTGGAGATCCTCCTTCTTGGATCGCTGATATCAGCTGGGTTCCTGACATGTGGAAGACATACAA
TTATAGTCCTAATAACAACTCAACGTTATGGACCCCACGATATACTTTGGATCTAAACAGTTGCTCACATTTTGCCAGGA
ATTTCTTGAACCATTTCGGTCGTGAGGTTTCTTTGCAGGCAGCTGAGGCTGCCGTTTCTCAGAATCTAGAGTTTCTGCTT
CCAACCATCATGATGCTAATGCCTGTGTACAGTGGACCTCATCATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis