Browse Element(s) Details


OsAffx.19477.1.S1_at

Description tigr:9640.m00309
TID=OsAffx.19477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03960Os.53234.1.S1_at11/1112+1645425..16469714'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19477.1.S1_at--443--3251Chr12:1630562..1630586 (25 bp)
CAACCACCGACGTAGGAGAGGTCCT
LOC_Os12g03940
OsAffx.19477.1.S1_at--694--971Chr12:1630549..1630573 (25 bp)
AGGAGAGGTCCTGGCTGACGCAACA
LOC_Os12g03940
OsAffx.19477.1.S1_at--971--2471Chr12:1630528..1630552 (25 bp)
AACAGCCCTCCACGTGAACATGGTG
LOC_Os12g03940
OsAffx.19477.1.S1_at--166--4551Chr12:1630527..1630548 (22 bp)
GCCCTCCACGTGAACATGGTGGGTA
LOC_Os12g03940
OsAffx.19477.1.S1_at--915--8691Chr12:1630176..1630200 (25 bp)
TGTCGGCTCCCTACAACTTATACCT
LOC_Os12g03940
OsAffx.19477.1.S1_at--830--3731Chr12:1630166..1630190 (25 bp)
CTACAACTTATACCTCTGAGCACTT
LOC_Os12g03940
OsAffx.19477.1.S1_at--645--311Chr12:1630157..1630181 (25 bp)
ATACCTCTGAGCACTTGTGCTTCCA
LOC_Os12g03940
OsAffx.19477.1.S1_at--252--10591Chr12:1630059..1630152 (25 bp)
TTCTCCTGTTAAGTTCATCGTTCGT
LOC_Os12g03940
OsAffx.19477.1.S1_at--232--1231Chr12:1630048..1630071 (24 bp)
AGTTCATCGTTCGTTCTTGTAACAG
LOC_Os12g03940
OsAffx.19477.1.S1_at--426--4031Chr12:1630041..1630065 (25 bp)
CGTTCGTTCTTGTAACAGATGTTCT
LOC_Os12g03940
OsAffx.19477.1.S1_at--171--2091Chr12:1630027..1630051 (25 bp)
ACAGATGTTCTAGCGTAGGACTACG
LOC_Os12g03940
Target Sequence 
CAACCACCGACGTAGGAGAGGTCCTGGCTGACGCAACAGCCCTCCACGTGAACATGGTGGGTAAAAGGAGTGCCGGGCCT
GTCGGCTCCCTACAACTTATACCTCTGAGCACTTGTGCTTCCATGGGTTCTCCTGTTAAGTTCATCGTTCGTTCTTGTAA
CAGATGTTCTAGCGTAGGACTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19477.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis