Browse Element(s) Details


OsAffx.19478.2.S1_at

Description tigr:9640.m00310
TID=OsAffx.19478.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g039509/11hypothetical protein
LOC_Os11g041509/11major facilitator superfamily antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03899OsAffx.19475.1.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.1.S1_a_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.19475.1.S1_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_s_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899Os.9752.3.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.30808.2.S1_x_at11/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03899OsAffx.27782.1.S1_at1/1112+1605095..1619843transporter, putative, expressed
LOC_Os12g03920OsAffx.30809.1.S1_x_at7/1112+1621020..1625198Nodulin, putative
LOC_Os12g03920Os.53105.1.S1_at5/1112+1621020..1625198Nodulin, putative
LOC_Os12g03930NANA12+1627755..1628672retrotransposon protein, putative, unclassified
LOC_Os12g03940OsAffx.19477.1.S1_at11/1112+1629993..1630617hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03960Os.53234.1.S1_at11/1112+1645425..16469714'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g04000Os.50938.1.S1_at10/1112+1657206..1659737Auxin efflux carrier component 3, putative, expressed
LOC_Os12g04010Os.54231.1.S1_at10/1112+1662836..1667934Mpp10 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19478.2.S1_at--274--7952Chr12:1638572..1638815 (25 bp)
GGATATCTTGCACAGGTTCCCATAT
LOC_Os12g03950
OsAffx.19478.2.S1_at--642--6512Chr12:1638571..1638814 (25 bp)
GATATCTTGCACAGGTTCCCATATT
LOC_Os12g03950
OsAffx.19478.2.S1_at--260--10152Chr12:1638569..1638812 (25 bp)
TATCTTGCACAGGTTCCCATATTTT
LOC_Os12g03950
OsAffx.19478.2.S1_at--556--3551Chr12:1638223..1638518 (25 bp)
CATTTGGCTCCCGAGTTTGTCAAGC
LOC_Os12g03950
OsAffx.19478.2.S1_at--906--10231Chr11:1684613..1684909 (25 bp)
TTTGGCTCCCGAGTTTGTCAAGCAA
LOC_Os11g04150
OsAffx.19478.2.S1_at--474--3072Chr12:1635637..1635776 (25 bp)
AATAACTTTGTGTGCAAACTACCGG
LOC_Os12g03950
OsAffx.19478.2.S1_at--271--3692Chr12:1635632..1635771 (25 bp)
CTTTGTGTGCAAACTACCGGTGTAC
LOC_Os12g03950
OsAffx.19478.2.S1_at--374--10832Chr12:1635630..1635650 (21 bp)
TTGTGTGCAAACTACCGGTGTACAT
LOC_Os12g03950
OsAffx.19478.2.S1_at--246--7452Chr12:1635628..1635650 (23 bp)
GTGTGCAAACTACCGGTGTACATGG
LOC_Os12g03950
OsAffx.19478.2.S1_at--819--2532Chr12:1635621..1635645 (25 bp)
AACTACCGGTGTACATGGTAGTACA
LOC_Os12g03950
OsAffx.19478.2.S1_at--208--811NONE
ATGGTAGTACAGGTTTTCTTGGGCA
NONE
Target Sequence 
GGATATCTTGCACAGGTTCCCATATTTTCTACCTTGTTTATGTATATCGATCTTCTGCTTCGTTATTCTTATAAGTTGCA
TTTGGCTCCCGAGTTTGTCAAGCAACACACTGGTCCAGCTAAAGATAAGAGCTTATTTAAGAATTGGCCATTAATGTCAT
CTATTGTTCTCTTCTGCATTGTCTCCTTCGATGACATGGCTTACACAGAGATATTTTCTCTATGGTCTGAAAGTGACAAA
CAATTTGGCGGACTAAATTTCTCGTCTGAGGATGTTGGTCAAGTTCTTGCAATTACAGGTGCTAGCATACTTATATACCA
GACATTTATCTACCCACATATTGTGAAAGTTCTAGGAATAATCAACACTTCTCGTGTTGCAGTAATTCTTTCTATGGCAC
TTCTTTGTAGTTATCCTCCTATGACATATCTCTCAAGACCTTGGTTGTCCATAGTAGTAAATATTGCATCGATGCTTAAA
AATAACTTTGTGTGCAAACTACCGGTGTACATGGTAGTACAGGTTTTCTTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19478.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis