Browse Element(s) Details


OsAffx.19519.1.S1_at

Description tigr:9640.m00541
TID=OsAffx.19519.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hin1-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0621011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein
LOC_Os12g06240OsAffx.31612.1.S1_at10/1112+2966582..2967203hypothetical protein
LOC_Os12g06250Os.54124.1.S1_at11/1112+2969930..2973161expressed protein
LOC_Os12g06250Os.54124.1.S2_at11/1112+2969930..2973161expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19519.1.S1_at--105--2631Chr12:2947371..2947395 (25 bp)
AACCTCACCGTCGTTGTCAGGAACG
LOC_Os12g06210
OsAffx.19519.1.S1_at--134--9391Chr12:2947361..2947385 (25 bp)
TCGTTGTCAGGAACGGCACGGCCGA
LOC_Os12g06210
OsAffx.19519.1.S1_at--700--7711Chr12:2947172..2947196 (25 bp)
GGGTGTTCCACCAGCCCAGGATGTC
LOC_Os12g06210
OsAffx.19519.1.S1_at--811--7151Chr12:2947140..2947164 (25 bp)
GTCGTGGCGATCGACTTCGACCGGA
LOC_Os12g06210
OsAffx.19519.1.S1_at--1157--511Chr12:2947014..2947038 (25 bp)
ATCGACGCGCGGGTGAGGTACAAGC
LOC_Os12g06210
OsAffx.19519.1.S1_at--432--8891Chr12:2947001..2947025 (25 bp)
TGAGGTACAAGCTGGGCTTCATCCC
LOC_Os12g06210
OsAffx.19519.1.S1_at--3--3251Chr12:2946994..2947018 (25 bp)
CAAGCTGGGCTTCATCCCGATAAGA
LOC_Os12g06210
OsAffx.19519.1.S1_at--527--9291Chr12:2946983..2947007 (25 bp)
TCATCCCGATAAGAGCCAGGCCGAA
LOC_Os12g06210
OsAffx.19519.1.S1_at--437--4051Chr12:2946977..2947001 (25 bp)
CGATAAGAGCCAGGCCGAAGGTTCG
LOC_Os12g06210
OsAffx.19519.1.S1_at--331--4031Chr12:2946962..2946986 (25 bp)
CGAAGGTTCGGTGCCCGGTGAGGAT
LOC_Os12g06210
OsAffx.19519.1.S1_at--98--8631Chr12:2946944..2946968 (25 bp)
TGAGGATTCCGGTCAAGGCCGAGCG
LOC_Os12g06210
Target Sequence 
AACCTCACCGTCGTTGTCAGGAACGGCACGGCCGACGGCGGCGGCAGCGGCGGCGTGGTGTACTACCGCCTCGCCGTCAA
CGTCACCATGTACAACCCCAGCGGCCGCGCGGGGGTCCACTACGACGCCATCCGCCCCCGCCTCCTCCTCCTCCTCGCCG
GCGGCGCGTCGCTCGGCGCCGCCAACGCCACCGTCCCCGGGGTGTTCCACCAGCCCAGGATGTCCACCACCGTCGTGGCG
ATCGACTTCGACCGGAGCGGCGGCGGCGGCGTCGCTGTCGCCGGCGACGTGGCGGCGGAGCTGGACAAGGAGATCAAGGG
TAGCGGCGGCGGCGGCGAGGTCGGGTTCGAGATGGTGATCGACGCGCGGGTGAGGTACAAGCTGGGCTTCATCCCGATAA
GAGCCAGGCCGAAGGTTCGGTGCCCGGTGAGGATTCCGGTCAAGGCCGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis