Browse Element(s) Details


OsAffx.19520.1.S1_at

Description tigr:9640.m00560
TID=OsAffx.19520.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0639011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed
LOC_Os12g06350NANA12+3043007..3046097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g06360OsAffx.20387.1.S1_x_at1/1112+3046350..3048728retrotransposon protein, putative, unclassified
LOC_Os12g06370OsAffx.17106.1.S1_x_at1/1112+3049788..3052848retrotransposon protein, putative, unclassified
LOC_Os12g06390OsAffx.19520.1.S1_at11/1112+3057519..3058481hypothetical protein
LOC_Os12g06380Os.24302.1.S1_at10/1112+3058462..3062767transposon protein, putative, unclassified, expressed
LOC_Os12g06400OsAffx.14433.1.S1_at1/1112+3065906..3066184hypothetical protein
LOC_Os12g06410NANA12+3067761..3069074U-box domain containing protein, expressed
LOC_Os12g06420OsAffx.18570.1.S1_at2/1112+3079841..3081532hypothetical protein
LOC_Os12g06430OsAffx.31614.1.S1_at11/1112+3082048..3082690hypothetical protein
LOC_Os12g06430OsAffx.15641.1.S1_at1/1112+3082048..3082690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19520.1.S1_at--307--7552Chr12:3057970..3057994 (25 bp)
GTGGCCGGGAAATTCCAGTTGCCGA
LOC_Os12g06390
OsAffx.19520.1.S1_at--941--7611Chr12:3057964..3057988 (25 bp)
GGGAAATTCCAGTTGCCGAGGAAGA
LOC_Os12g06390
OsAffx.19520.1.S1_at--581--5091Chr12:3057897..3057921 (25 bp)
GCACATCAAAGTAATGGACGGGCTT
LOC_Os12g06390
OsAffx.19520.1.S1_at--636--4931Chr12:3057876..3057900 (25 bp)
GCTTGTTGACGAAGACGAGATCCTC
LOC_Os12g06390
OsAffx.19520.1.S1_at--251--2771Chr12:3057865..3057889 (25 bp)
AAGACGAGATCCTCTACGCCCTTGG
LOC_Os12g06390
OsAffx.19520.1.S1_at--465--4551Chr12:3057826..3057850 (25 bp)
GCCCACTCGGCATGCATCAAAGTAA
LOC_Os12g06390
OsAffx.19520.1.S1_at--1009--631Chr12:3057815..3057839 (25 bp)
ATGCATCAAAGTAACCGCTCCTGGA
LOC_Os12g06390
OsAffx.19520.1.S1_at--1110--4111Chr12:3057577..3057601 (25 bp)
CGCGACGGGACGATCTGAAGCCCAA
LOC_Os12g06390
OsAffx.19520.1.S1_at--532--7631Chr12:3057571..3057595 (25 bp)
GGGACGATCTGAAGCCCAAGCAGAC
LOC_Os12g06390
OsAffx.19520.1.S1_at--254--4552Chr08:25485467..25485645 (25 bp)
GCCCAAGCAGACGAGAAAGACGCAT
NONE
OsAffx.19520.1.S1_at--855--1392Chr08:25485629..25485653 (25 bp)
AGACGAGAAAGACGCATCTCATCTT
NONE
Target Sequence 
GTGGCCGGGAAATTCCAGTTGCCGAGGAAGAGGCGGTGGAGAGCGGCGCAGCGGAGGATGTCGGCAGTGAGGGGCACATC
AAAGTAATGGACGGGCTTGTTGACGAAGACGAGATCCTCTACGCCCTTGGCGGCGACGAGGCGCGCCCACTCGGCATGCA
TCAAAGTAACCGCTCCTGGAGCACCTCGAGGGAGGAGGGGAGCTCGACGGCCTCGAGCTCGCCGGCGGGGTCGGAGGAGA
GCGGCGCCTCCGTCGCCCCCATCGTCAAGTCCCTCCACGGCCTCGATGTCGACCGCCAGAACCTCCCCCGCGCCGGGCTA
TCGGGCGTCGACGGGGAGGCGCGGGTGTGCGCGGGCGTCGACGGGGCGAGGCGGGAAAGGAGGAAGACGGCGCCGCGACG
GGACGATCTGAAGCCCAAGCAGACGAGAAAGACGCATCTCATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis