Browse Element(s) Details


OsAffx.31614.1.S1_at

Description tigr:9640.m00565
TID=OsAffx.31614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0643011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06390OsAffx.19520.1.S1_at11/1112+3057519..3058481hypothetical protein
LOC_Os12g06380Os.24302.1.S1_at10/1112+3058462..3062767transposon protein, putative, unclassified, expressed
LOC_Os12g06400OsAffx.14433.1.S1_at1/1112+3065906..3066184hypothetical protein
LOC_Os12g06410NANA12+3067761..3069074U-box domain containing protein, expressed
LOC_Os12g06420OsAffx.18570.1.S1_at2/1112+3079841..3081532hypothetical protein
LOC_Os12g06430OsAffx.31614.1.S1_at11/1112+3082048..3082690hypothetical protein
LOC_Os12g06430OsAffx.15641.1.S1_at1/1112+3082048..3082690hypothetical protein
LOC_Os12g06440Os.51885.1.S1_at11/1112+3086299..3090664expressed protein
LOC_Os12g06450OsAffx.31615.1.S1_at6/1112+3095623..3096105hypothetical protein
LOC_Os12g06464Os.54801.1.A1_at11/1112+3099854..3109419expressed protein
LOC_Os12g06464OsAffx.31615.1.S1_at11/1112+3099854..3109419expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31614.1.S1_at--421--4371Chr12:3082632..3082656 (25 bp)
CCACGTGGCGGTTAGGCGAGGGCCT
LOC_Os12g06430
OsAffx.31614.1.S1_at--952--9471Chr12:3082183..3082568 (25 bp)
TCTGCGTCGTCCGAGGTCGAGAGTT
LOC_Os12g06430
OsAffx.31614.1.S1_at--982--9371Chr12:3082167..3082191 (25 bp)
TCGAGAGTTGGAGATGACCTAGCAA
LOC_Os12g06430
OsAffx.31614.1.S1_at--860--6051Chr12:3082163..3082187 (25 bp)
GAGTTGGAGATGACCTAGCAAATCA
LOC_Os12g06430
OsAffx.31614.1.S1_at--875--6611Chr12:3082161..3082185 (25 bp)
GTTGGAGATGACCTAGCAAATCATG
LOC_Os12g06430
OsAffx.31614.1.S1_at--520--3711Chr12:3082149..3082173 (25 bp)
CTAGCAAATCATGGCGACGTGCGGT
LOC_Os12g06430
OsAffx.31614.1.S1_at--885--4631Chr12:3082089..3082113 (25 bp)
GCGTTGCGGTTCCAGGCGACCAAAA
LOC_Os12g06430
OsAffx.31614.1.S1_at--644--6671Chr12:3082087..3082111 (25 bp)
GTTGCGGTTCCAGGCGACCAAAATA
LOC_Os12g06430
OsAffx.31614.1.S1_at--856--4671Chr12:3082084..3082108 (25 bp)
GCGGTTCCAGGCGACCAAAATAGCC
LOC_Os12g06430
OsAffx.31614.1.S1_at--1020--6671Chr12:3082081..3082105 (25 bp)
GTTCCAGGCGACCAAAATAGCCGAG
LOC_Os12g06430
OsAffx.31614.1.S1_at--455--4331Chr12:3082078..3082102 (25 bp)
CCAGGCGACCAAAATAGCCGAGGGT
LOC_Os12g06430
Target Sequence 
CCACGTGGCGGTTAGGCGAGGGCCTCGGGGTGAGGCAGCGCGAGGGCCCGAGGGGCGTGACGTGGCACCCTGAGGCCCTC
TGGCTGCCTCTGCGTCGTCCGAGGTCGAGAGTTGGAGATGACCTAGCAAATCATGGCGACGTGCGGTGGCGATGCTCCGG
CGGGTGGCTACGCACCTGGTGGGCGTTGCGGTTCCAGGCGACCAAAATAGCCGAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis