Browse Element(s) Details


Os.51885.1.S1_at

Description gb:AK064192.1
DB_XREF= gi:32974210
TID=Os.51885.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C10, full insert sequence.
FL= gb:AK064192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06380Os.24302.1.S1_at10/1112+3058462..3062767transposon protein, putative, unclassified, expressed
LOC_Os12g06400OsAffx.14433.1.S1_at1/1112+3065906..3066184hypothetical protein
LOC_Os12g06410NANA12+3067761..3069074U-box domain containing protein, expressed
LOC_Os12g06420OsAffx.18570.1.S1_at2/1112+3079841..3081532hypothetical protein
LOC_Os12g06430OsAffx.31614.1.S1_at11/1112+3082048..3082690hypothetical protein
LOC_Os12g06430OsAffx.15641.1.S1_at1/1112+3082048..3082690hypothetical protein
LOC_Os12g06440Os.51885.1.S1_at11/1112+3086299..3090664expressed protein
LOC_Os12g06450OsAffx.31615.1.S1_at6/1112+3095623..3096105hypothetical protein
LOC_Os12g06464Os.54801.1.A1_at11/1112+3099854..3109419expressed protein
LOC_Os12g06464OsAffx.31615.1.S1_at11/1112+3099854..3109419expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51885.1.S1_at--1097--2791Chr12:3086745..3086769 (25 bp)
AAGATGGTGGAGTGACGCCCTTCCT
LOC_Os12g06440
Os.51885.1.S1_at--1067--9231Chr12:3086724..3086748 (25 bp)
TCCTTGGGAGTGGTTTTACGGCTCT
LOC_Os12g06440
Os.51885.1.S1_at--1119--1931Chr12:3086707..3086731 (25 bp)
ACGGCTCTTGAGCAGGTACTCGGAA
LOC_Os12g06440
Os.51885.1.S1_at--206--5111Chr12:3086629..3086653 (25 bp)
GCACTAAGATATACTCCTTTCGTTT
LOC_Os12g06440
Os.51885.1.S1_at--4--7011Chr12:3086568..3086592 (25 bp)
GTACTGGTCCAGGTTTATAGCTAGA
LOC_Os12g06440
Os.51885.1.S1_at--449--7651Chr12:3086516..3086540 (25 bp)
GGGAGTATGAGTTCTCTGGTTCTAT
LOC_Os12g06440
Os.51885.1.S1_at--1062--8511Chr12:3086483..3086507 (25 bp)
TGGAAGCACGCGGACATTCGATCGT
LOC_Os12g06440
Os.51885.1.S1_at--150--111Chr12:3086468..3086492 (25 bp)
ATTCGATCGTGTTAGCGTGTGCACA
LOC_Os12g06440
Os.51885.1.S1_at--1043--8971Chr12:3086350..3086374 (25 bp)
TGAACTCCTATTTTAGACCTCACGC
LOC_Os12g06440
Os.51885.1.S1_at--798--5831Chr12:3086335..3086359 (25 bp)
GACCTCACGCCATGTAAGAGTGTTT
LOC_Os12g06440
Os.51885.1.S1_at--120--2551Chr12:3086300..3086324 (25 bp)
AACTCATAGCCCCTTTATACTGTCT
LOC_Os12g06440
Target Sequence 
AAGATGGTGGAGTGACGCCCTTCCTTGGGAGTGGTTTTACGGCTCTTGAGCAGGTACTCGGAATACACCACACACACTAT
CTAGTGATAATTTGTGGTAGATCCTAATACCTTAGAGCACTAAGATATACTCCTTTCGTTTTAAAAAGAATCAATGCTAG
TTATTAACCTAGACTAAGTACTGGTCCAGGTTTATAGCTAGATATAGGAATTGGTTTATTTTTTATGGAGGGAGTATGAG
TTCTCTGGTTCTATGGATTTATTGGAAGCACGCGGACATTCGATCGTGTTAGCGTGTGCACAAGATTATTCTAAAGGCTC
CAAAATTGCCAATATCATTAAATTCAATTTTCTAGTTTAGTTTTAAACCATGTAAGAGTCTGTTTCATCTTTTCTTGAAC
TCCTATTTTAGACCTCACGCCATGTAAGAGTGTTTAACTTTTTTTAACTCATAGCCCCTTTATACTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis