Browse Element(s) Details


OsAffx.19564.1.S1_at

Description tigr:9640.m00845
TID=OsAffx.19564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0907011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19564.1.S1_at--14--2731Chr12:4741576..4741600 (25 bp)
AAGAATCGGTGGATCGCCGAGAAGA
LOC_Os12g09070
OsAffx.19564.1.S1_at--193--1451Chr12:4741598..4741622 (25 bp)
AGAAGCGCCGGATCGAGAAGGAATC
LOC_Os12g09070
OsAffx.19564.1.S1_at--84--1951Chr12:4741688..4741712 (25 bp)
ACGGCGCTGGCGTCAATCTTGACAA
LOC_Os12g09070
OsAffx.19564.1.S1_at--676--4011Chr12:4741698..4741722 (25 bp)
CGTCAATCTTGACAAGGTGCTCGGC
LOC_Os12g09070
OsAffx.19564.1.S1_at--1042--9511Chr12:4741745..4741769 (25 bp)
TCTACGAGGAGATCCGGCTGCAAGC
LOC_Os12g09070
OsAffx.19564.1.S1_at--358--7611Chr12:4741904..4741928 (25 bp)
GGGAAATCCTGGGACGCTACTGCCT
LOC_Os12g09070
OsAffx.19564.1.S1_at--1034--6371Chr12:4741942..4741966 (25 bp)
GATCCCGCGGGCAGCCGAGCAGACA
LOC_Os12g09070
OsAffx.19564.1.S1_at--783--5071Chr12:4741952..4741976 (25 bp)
GCAGCCGAGCAGACATCAAGATCGG
LOC_Os12g09070
OsAffx.19564.1.S1_at--962--831Chr12:4741985..4742009 (25 bp)
ATGGAGGCAGCTGGTCGCCGTTTTT
LOC_Os12g09070
OsAffx.19564.1.S1_at--47--8611Chr12:4741996..4742020 (25 bp)
TGGTCGCCGTTTTTGATCGCTCGCA
LOC_Os12g09070
OsAffx.19564.1.S1_at--176--6791Chr12:4742004..4742028 (25 bp)
GTTTTTGATCGCTCGCAACCTCGGC
LOC_Os12g09070
Target Sequence 
AAGAATCGGTGGATCGCCGAGAAGAAGCGCCGGATCGAGAAGGAATCCAAGCGGCAGCAGCGGAGGAGGAACTCCGGCGA
CTCCGCCGCCGCCACCACCACCGTCCTCCTCGACGGCGCTGGCGTCAATCTTGACAAGGTGCTCGGCGAGGACTTCGAGA
GGAAGCGGTTCTACGAGGAGATCCGGCTGCAAGCCGAGACCCGCCGCCGTGCCACGCCGGAGGAAGAGCCCTCCACCGCC
GCGGTCGTCGTGACGGAGGAGGACGACGAGGAGAGCGACGACGACGACGTCCCCGCCCGCGGCGAGGAGGGCTACCTCGA
GAGGCGCCGGGAAATCCTGGGACGCTACTGCCTCACGCCGGCGCACGATCCCGCGGGCAGCCGAGCAGACATCAAGATCG
GCGAGGAGGATGGAGGCAGCTGGTCGCCGTTTTTGATCGCTCGCAACCTCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis