Browse Element(s) Details


OsAffx.19565.1.S1_at

Description tigr:9640.m00846
TID=OsAffx.19565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0908011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09030NANA12+4719819..4720796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19565.1.S1_at--126--5751Chr12:4745995..4746019 (25 bp)
GACGGCGTCAGCAACCGGCTACGGA
LOC_Os12g09080
OsAffx.19565.1.S1_at--774--7091Chr12:4746001..4746025 (25 bp)
GTCAGCAACCGGCTACGGAGGATAC
LOC_Os12g09080
OsAffx.19565.1.S1_at--294--7731Chr12:4746068..4746092 (25 bp)
GGTGGGCGGACAACCACGACCGCAT
LOC_Os12g09080
OsAffx.19565.1.S1_at--974--1791Chr12:4746181..4746205 (25 bp)
ACCCCATGCCAATCCGAGGCGGAGG
LOC_Os12g09080
OsAffx.19565.1.S1_at--849--4331Chr12:4746184..4746208 (25 bp)
CCATGCCAATCCGAGGCGGAGGACG
LOC_Os12g09080
OsAffx.19565.1.S1_at--280--1851Chr12:4746218..4746242 (25 bp)
ACGACGGAGCAGAGTCGTCGTCACG
LOC_Os12g09080
OsAffx.19565.1.S1_at--690--8351Chr12:4746289..4746313 (25 bp)
GGCGGCGGGTCAACCGGCACGTTGG
LOC_Os12g09080
OsAffx.19565.1.S1_at--330--2631Chr12:4746300..4746324 (25 bp)
AACCGGCACGTTGGGCTCGCCGATA
LOC_Os12g09080
OsAffx.19565.1.S1_at--89--6611Chr12:4746309..4746333 (25 bp)
GTTGGGCTCGCCGATACTGGGCCTC
LOC_Os12g09080
OsAffx.19565.1.S1_at--382--6091Chr12:4746427..4746451 (25 bp)
GAGTACGAGCCCGGCGTGTTCATCA
LOC_Os12g09080
OsAffx.19565.1.S1_at--872--9371Chr12:4746494..4746655 (25 bp)
TCGAGCTCAGCCGCGAGAAGTTTGG
LOC_Os12g09080
Target Sequence 
GACGGCGTCAGCAACCGGCTACGGAGGATACGGTTCAGGGAGGAGGTGTTCGACGCGTGGGCGGCGCAGTGCTGGTGGGC
GGACAACCACGACCGCATCGCCGAGCTCTACTGCCTCGTCAAGCCCGACGACGACGACGACGAGGAGGAGGCGATAGCCG
CGGCGGAGGCGGCCATGTTGCCGGCCACCCCATGCCAATCCGAGGCGGAGGACGACGACGACGACGACGGAGCAGAGTCG
TCGTCACGGTCGCCGTCGACGTCCACCTTCTCCGGTGGCCCTTCCAGCGGCAGCGGCGGCGGGTCAACCGGCACGTTGGG
CTCGCCGATACTGGGCCTCGTCACCGCGCCCAACACCACCGGAGGCGGCGAGCACGACGCCGTCCGCGACCAGCACCAGC
CGACGGCGGCGACGTGGAGGGAGTGGGTGGAGGAGTACGAGCCCGGCGTGTTCATCACCGTCGGAGCCTATCCCGGCCAC
CGCCTCCAGCTCCGGTGCGTCGAGCTCAGCCGCGAGAAGTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis