Browse Element(s) Details


OsAffx.19628.1.S1_at

Description tigr:9640.m01201
TID=OsAffx.19628.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1251411/11oxidoreductase, zinc-binding dehydrogenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12460NANA12+6864813..6865761hypothetical protein
LOC_Os12g12470OsAffx.7566.1.S1_s_at11/1112+6868909..6871181NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12470OsAffx.7566.1.S1_at11/1112+6868909..6871181NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12480Os.46012.3.S1_x_at6/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12480Os.46012.2.S1_x_at5/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12480Os.46012.3.S1_at4/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12490Os.47463.1.S1_x_at4/1112+6877222..6883485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12490Os.14491.2.S1_x_at3/1112+6877222..6883485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12500OsAffx.8898.1.S1_at1/1112+6886124..6887466transposon protein, putative, Pong sub-class
LOC_Os12g12514OsAffx.19628.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514OsAffx.19629.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514Os.52239.1.S1_at1/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12530NANA12+6898518..6899015hypothetical protein
LOC_Os12g12540Os.40360.1.S1_at9/1112+6901379..6903914hypothetical protein
LOC_Os12g12540Os.40360.1.S1_x_at4/1112+6901379..6903914hypothetical protein
LOC_Os12g12550OsAffx.19631.1.S1_at11/1112+6908509..6908939hypothetical protein
LOC_Os12g12560Os.53004.1.S1_at11/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12560OsAffx.29832.2.S1_at1/1112+6910166..6912819NADP-dependent oxidoreductase P2, putative, expressed
LOC_Os12g12570OsAffx.7567.1.S1_at11/1112+6913838..6914215hypothetical protein
LOC_Os12g12580Os.34373.1.S1_at11/1112+6915075..6917439NADP-dependent oxidoreductase P2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19628.1.S1_at--234--331Chr12:6888946..6888970 (25 bp)
ATACTTGACGGCATGCGAGATCGGC
LOC_Os12g12514
OsAffx.19628.1.S1_at--1092--8251Chr12:6889000..6889024 (25 bp)
GGCAGAGGCAGTGCCGCTATCTGTT
LOC_Os12g12514
OsAffx.19628.1.S1_at--739--2511Chr12:6889055..6889079 (25 bp)
AACTTATACATTTCATGCGACCCCT
LOC_Os12g12514
OsAffx.19628.1.S1_at--571--7991Chr12:6889092..6889116 (25 bp)
GGATGATCCGCCATGAGGTGCCCAC
LOC_Os12g12514
OsAffx.19628.1.S1_at--1074--9871Chr12:6889118..6889142 (25 bp)
TACATCTCGGACTTTGTCCCAGGAG
LOC_Os12g12514
OsAffx.19628.1.S1_at--605--3031Chr12:6889659..6889683 (25 bp)
AATCCGGAGTCTCTTTTCAAGATCA
LOC_Os12g12514
OsAffx.19628.1.S1_at--74--9011Chr12:6889691..6889715 (25 bp)
TGAATTTCCTCTTTCCAACTACACT
LOC_Os12g12514
OsAffx.19628.1.S1_at--1035--2011Chr12:6889708..6889870 (25 bp)
ACTACACTGGTGTTCTGGTCCCGGT
LOC_Os12g12514
OsAffx.19628.1.S1_at--406--19912Chr12:6891191..6891215 (25 bp)
ACTATTGTAGATTTGGGTCGACCGA
LOC_Os12g12514
OsAffx.19628.1.S1_at--508--1111Chr12:6891236..6891476 (25 bp)
AGTGTTTGCTTATTGGTTGTCCTGT
LOC_Os12g12514
OsAffx.19628.1.S1_at--697--6631Chr12:6891467..6891491 (25 bp)
GTTGTCCTGTATGATTGGGTAAGCA
LOC_Os12g12514
Target Sequence 
ATACTTGACGGCATGCGAGATCGGCCAGTTGGGGGATGAAATGGAGGTGGTGACGGCAGAGGCAGTGCCGCTATCTGTTC
CGGCAGGGTCATCTGCGGTGCTGGTGAAGAACTTATACATTTCATGCGACCCCTACCTACGCAACCGGATGATCCGCCAT
GAGGTGCCCACCTACATCTCGGACTTTGTCCCAGGAGAGGTTGTGACAAGTCATGGCGTGATGAAGGTGATATCATCTGG
GCACCTGGATTTCAAGGCCGGCGACCTTGTTTGGGGGATGACCGGATGGGAAGAATACACTCTAATCAATAATCCGGAGT
CTCTTTTCAAGATCAATTACCCTGAATTTCCTCTTTCCAACTACACTGGTGTTCTGGTCCCGGTTTTAAATGGAACCGGG
ACTATTGTAGATTTGGGTCGACCGATCAAAGATGGTTTCTCCACCAGTGTTTGCTTATTGGTTGTCCTGTATGATTGGGT
AAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis