Browse Element(s) Details


OsAffx.7566.1.S1_s_at

Description tigr:9640.m01197
TID=OsAffx.7566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, zinc-binding dehydrogenase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1247011/11NADP-dependent oxidoreductase P1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12429NANA12+6843871..6845114NA
LOC_Os12g12440OsAffx.32166.1218.S1_x_at6/1112+6845960..6847222hypothetical protein
LOC_Os12g12450NANA12+6849002..6854105retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g12460NANA12+6864813..6865761hypothetical protein
LOC_Os12g12470OsAffx.7566.1.S1_s_at11/1112+6868909..6871181NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12470OsAffx.7566.1.S1_at11/1112+6868909..6871181NADP-dependent oxidoreductase P1, putative, expressed
LOC_Os12g12480Os.46012.3.S1_x_at6/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12480Os.46012.2.S1_x_at5/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12480Os.46012.3.S1_at4/1112+6874136..6876756retrotransposon protein, putative, unclassified
LOC_Os12g12490Os.47463.1.S1_x_at4/1112+6877222..6883485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12490Os.14491.2.S1_x_at3/1112+6877222..6883485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12500OsAffx.8898.1.S1_at1/1112+6886124..6887466transposon protein, putative, Pong sub-class
LOC_Os12g12514OsAffx.19628.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514OsAffx.19629.1.S1_at11/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein
LOC_Os12g12514Os.52239.1.S1_at1/1112+6888902..6895519oxidoreductase, zinc-binding dehydrogenase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7566.1.S1_s_at--1011--5691Chr12:6870161..6870185 (25 bp)
GACTATGTTTTCGTCTCCGCGGCAT
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--911--8331Chr12:6870456..6870476 (21 bp)
TGGAGGGAGCCCTTAAAAGGTGCTT
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--373--9811Chr12:6870583..6870603 (21 bp)
TAAAAGGTGCTTCCCGGACGGCATC
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--737--9531Chr12:6870608..6870632 (25 bp)
TCTACTTTGATAACGTGGGTGGTGC
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--817--4491Chr12:6870643..6870667 (25 bp)
GCCGTGCTGCCGAACATGCGTATCG
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--419--5491Chr12:6870654..6870678 (25 bp)
GAACATGCGTATCGGCGGCAAGATA
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--694--191Chr12:6870702..6870726 (25 bp)
ATATAACCTGGAGCGGCCAGACGGG
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--887--7271Chr12:6870727..6870751 (25 bp)
GTGCGGAACCTCTTCTACTTATTCG
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--978--2031Chr12:6870743..6870767 (25 bp)
ACTTATTCGCCAAGAGCCTACGGAT
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--561--7671Chr12:6870772..6870796 (25 bp)
GGGTTCCTGGTGAGCAACTACATTG
LOC_Os12g12470
OsAffx.7566.1.S1_s_at--723--2531Chr12:6870787..6870811 (25 bp)
AACTACATTGCAATATACCACCGGT
LOC_Os12g12470
Target Sequence 
GACTATGTTTTCGTCTCCGCGGCATCCGGTGCCGTAGGTCAGATTGTTGGGCAACTGGCTAAGATCACAGGCTGCTATGT
GGTTGGCAGTGCTGGTTCTGATGAGAAGGTCAAGCTGCTCAAAACTAAGTTTGGCTTTCATGACGCGTTCAACTACAAGA
AGGAGCTGGACCTGGAGGGAGCCCTTAAAAGGTGCTTCCCGGACGGCATCGACATCTACTTTGATAACGTGGGTGGTGCA
ATGTTGGACGCCGTGCTGCCGAACATGCGTATCGGCGGCAAGATAACGATATGTGGGATGATCTCGCAATATAACCTGGA
GCGGCCAGACGGGGTGCGGAACCTCTTCTACTTATTCGCCAAGAGCCTACGGATGGAGGGGTTCCTGGTGAGCAACTACA
TTGCAATATACCACCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7566.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis