Browse Element(s) Details


OsAffx.19638.1.S1_at

Description tigr:9640.m01263
TID=OsAffx.19638.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1309011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13060NANA12+7248426..7251433retrotransposon protein, putative, unclassified
LOC_Os12g13070OsAffx.8589.1.S1_at1/1112+7253980..7255812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13080Os.39476.1.S1_at7/1112+7262472..7264668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13090OsAffx.19638.1.S1_at11/1112+7274170..7274674hypothetical protein
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19638.1.S1_at--143--7711Chr12:7274299..7274323 (25 bp)
GGTGGCCTCATTTGGATTGATCAGC
LOC_Os12g13090
OsAffx.19638.1.S1_at--905--6571Chr12:7274313..7274337 (25 bp)
GATTGATCAGCTTGGCGGCATGCTA
LOC_Os12g13090
OsAffx.19638.1.S1_at--828--4691Chr12:7274327..7274351 (25 bp)
GCGGCATGCTAGGAGCACTATCAAA
LOC_Os12g13090
OsAffx.19638.1.S1_at--801--3291Chr12:7274348..7274372 (25 bp)
CAAATGCTGAGATGGCGACAAGGGC
LOC_Os12g13090
OsAffx.19638.1.S1_at--1118--1291Chr12:7274512..7274536 (25 bp)
AGATGTCGGTGGTGGCTATCCAGTT
LOC_Os12g13090
OsAffx.19638.1.S1_at--480--9431Chr12:7274517..7274541 (25 bp)
TCGGTGGTGGCTATCCAGTTCGGCT
LOC_Os12g13090
OsAffx.19638.1.S1_at--1159--3431Chr12:7274532..7274556 (25 bp)
CAGTTCGGCTGTGCCTTAGCTTTAA
LOC_Os12g13090
OsAffx.19638.1.S1_at--358--9191Chr12:7274543..7274567 (25 bp)
TGCCTTAGCTTTAATGGTGCGCTAG
LOC_Os12g13090
OsAffx.19638.1.S1_at--651--4851Chr12:7274563..7274587 (25 bp)
GCTAGGAGCGCCAGTGATTGCCACG
LOC_Os12g13090
OsAffx.19638.1.S1_at--428--4351Chr12:7274573..7274597 (25 bp)
CCAGTGATTGCCACGATGACTTGGA
LOC_Os12g13090
OsAffx.19638.1.S1_at--234--10851Chr12:7274593..7274617 (25 bp)
TTGGACTAGGGCATCAATGGCGGAT
LOC_Os12g13090
Target Sequence 
GGTGGCCTCATTTGGATTGATCAGCTTGGCGGCATGCTAGGAGCACTATCAAATGCTGAGATGGCGACAAGGGCCAGGGT
GGTGTTGGCCGGTGATGGTGGTCGTGCTGGTGAGGTGGGAGATGTCGGTGGTGGCTATCCAGTTCGGCTGTGCCTTAGCT
TTAATGGTGCGCTAGGAGCGCCAGTGATTGCCACGATGACTTGGACTAGGGCATCAATGGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis