Browse Element(s) Details


Os.50753.1.S1_at

Description gb:AK058317.1
DB_XREF= gi:32968335
TID=Os.50753.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A08, full insert sequence.
FL= gb:AK058317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1312011/11histidine triad family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13090OsAffx.19638.1.S1_at11/1112+7274170..7274674hypothetical protein
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50753.1.S1_at--381--1511Chr12:7294881..7294902 (22 bp)
AGCAGGGCAGGTTATTTTTCACACT
LOC_Os12g13120
Os.50753.1.S1_at--37--10391Chr12:7294896..7295041 (25 bp)
TTTTCACACTCATGTTCACCTCATT
LOC_Os12g13120
Os.50753.1.S1_at--212--8371Chr12:7295054..7295077 (24 bp)
GGCGATAACTTGTGGTCTTCAGAGA
LOC_Os12g13120
Os.50753.1.S1_at--801--8171Chr12:7295232..7295256 (25 bp)
GGAACTCTATCAAGCACAACCAGGA
LOC_Os12g13120
Os.50753.1.S1_at--5--10011Chr12:7295272..7295296 (25 bp)
TAGCGGCATCAAGGAACTACTCTTC
LOC_Os12g13120
Os.50753.1.S1_at--807--2491Chr12:7295366..7295390 (25 bp)
AACAGGCTTATTTTCTGCTTCTCTC
LOC_Os12g13120
Os.50753.1.S1_at--911--10591Chr12:7295378..7295402 (25 bp)
TTCTGCTTCTCTCAGTCATCTTGAA
LOC_Os12g13120
Os.50753.1.S1_at--670--7131Chr12:7295392..7295416 (25 bp)
GTCATCTTGAAGAGCACTGCTGCGA
LOC_Os12g13120
Os.50753.1.S1_at--365--6891Chr12:7295428..7295452 (25 bp)
GTATAGTTTGTACCTCATGCTTCAA
LOC_Os12g13120
Os.50753.1.S1_at--344--4891Chr12:7295575..7295599 (25 bp)
GCTTTAGCTCTGTGGTTTCATGGAA
LOC_Os12g13120
Os.50753.1.S1_at--173--6711Chr12:7295646..7295670 (25 bp)
GTTCCCACCTGCACAATGTTTTGAT
LOC_Os12g13120
Target Sequence 
AGCAGGGCAGGTTATTTTTCACACTCATGTTCACCTCATTCCCCGTAGAAAAGGCGATAACTTGTGGTCTTCAGAGACTT
ATGAAAGGAACTCTATCAAGCACAACCAGGAAACCAAAGATCTTGTTAGCGGCATCAAGGAACTACTCTTCCCACCTCAG
GATGACAGCGCTGAAGGGTCAACGATACCGAAGGAACTCTAAGAAGTAGATAACCAAGTCAACAGGCTTATTTTCTGCTT
CTCTCAGTCATCTTGAAGAGCACTGCTGCGAGATGAGTTGATGTATAGTTTGTACCTCATGCTTCAAAATTTTGATACTA
ACTGGCTAAGTAATCATCCTAGAAAAGCCAAATGGCAGAAACTTGCTAGTGATCTGAACACTTCATGTGAAAAAAAAAAT
AGTAAAATTGGGCTTGTTAAACTTGGTAGGCTTTAGCTCTGTGGTTTCATGGAAGCGAAGAACTGGCAAACCTGGGCCGG
CCGGTGGTGAATCGTGGGTTGTTCCCACCTGCACAATGTTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis