Browse Element(s) Details


Os.50761.1.S1_at

Description gb:AK058390.1
DB_XREF= gi:32968408
TID=Os.50761.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-A05, full insert sequence.
FL= gb:AK058390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1315011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein
LOC_Os12g13160NANA12+7327780..7328511expressed protein
LOC_Os12g13170Os.2234.1.A1_a_at11/1112+7329479..7335516bZIP transcription factor family protein, expressed
LOC_Os12g13180Os.10827.1.S1_x_at5/1112+7341980..7346875transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g13180Os.46055.2.S1_x_at3/1112+7341980..7346875transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g13190NANA12+7347556..7348170retrotransposon protein, putative, unclassified
LOC_Os12g13200OsAffx.25936.2.S1_x_at1/1112+7349557..7351491transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50761.1.S1_at--605--51Chr12:7324292..7324316 (25 bp)
ATTGTTCTCTCACATATGCCATCTT
LOC_Os12g13150
Os.50761.1.S1_at--545--8131Chr12:7324320..7324344 (25 bp)
GGACATCTTGCTAGGTCATCGCAGA
LOC_Os12g13150
Os.50761.1.S1_at--573--531Chr12:7324337..7324361 (25 bp)
ATCGCAGAACGATCTCCTTGTAAAG
LOC_Os12g13150
Os.50761.1.S1_at--628--5411Chr12:7324371..7324395 (25 bp)
GAAGCGAATGCACCAGGGACATCCA
LOC_Os12g13150
Os.50761.1.S1_at--182--3071Chr12:7324405..7324429 (25 bp)
AATCTCTACTGTTTGCTAGGGTCTT
LOC_Os12g13150
Os.50761.1.S1_at--967--7691Chr12:7324423..7324447 (25 bp)
GGGTCTTGTTTCCTAGTTTCATATC
LOC_Os12g13150
Os.50761.1.S1_at--643--251Chr12:7324469..7324493 (25 bp)
ATATCTACTGGCTGGCTTTGTCATC
LOC_Os12g13150
Os.50761.1.S1_at--1125--871Chr12:7324543..7324567 (25 bp)
AGGCCAGCGTGCGACGATACCTGAA
LOC_Os12g13150
Os.50761.1.S1_at--40--8991Chr12:7324625..7324649 (25 bp)
TGAACTGTCTGTAAGCCATGCTCTC
LOC_Os12g13150
Os.50761.1.S1_at--560--8691Chr12:7324679..7324703 (25 bp)
TGTGCAAGCTGCATTGGCAACCCTT
LOC_Os12g13150
Os.50761.1.S1_at--253--5151Chr12:7324695..7324719 (25 bp)
GCAACCCTTCCGAACCAAGATTTGT
LOC_Os12g13150
Target Sequence 
ATTGTTCTCTCACATATGCCATCTTGTCGGACATCTTGCTAGGTCATCGCAGAACGATCTCCTTGTAAAGTGGAATGATG
AAGCGAATGCACCAGGGACATCCAAGACAAATAAATCTCTACTGTTTGCTAGGGTCTTGTTTCCTAGTTTCATATCTGAA
CTGGTGCTCAGGGGCCAATATCTACTGGCTGGCTTTGTCATCTCCAGATGGATGCATACCCACCCATCCCTTGGCCTGAT
GGATGTCGCGGAGGCCAGCGTGCGACGATACCTGAATGGTCAGATTGTTCAAGCTCAGCAATTGGGAGGAACCGATGTTT
TTCTTACTGACAATGAACTGTCTGTAAGCCATGCTCTCTCCACTCTACGATCAAACTTGGTTTCTCTTGTGCAAGCTGCA
TTGGCAACCCTTCCGAACCAAGATTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis