Browse Element(s) Details


Os.27233.1.S1_at

Description gb:AK069593.1
DB_XREF= gi:32979617
TID=Os.27233.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023023L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023L10, full insert sequence.
FL= gb:AK069593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1313010/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein
LOC_Os12g13160NANA12+7327780..7328511expressed protein
LOC_Os12g13170Os.2234.1.A1_a_at11/1112+7329479..7335516bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27233.1.S1_at--924--91Chr12:7308036..7308135 (25 bp)
ATTCTTGCACCAGAGGGAAATGAAG
LOC_Os12g13130
Os.27233.1.S1_at--895--9771Chr12:7308152..7308176 (25 bp)
TAAGACGAATTTCGAAAGTTGTCCA
LOC_Os12g13130
Os.27233.1.S1_at--539--9551Chr12:7308190..7308421 (25 bp)
TCTTAGGTACCTAATTCCATGCCCT
LOC_Os12g13130
Os.27233.1.S1_at--267--1031NONE
AGGTACCTAATTCCATGCCCTGCTT
NONE
Os.27233.1.S1_at--34--3671Chr12:7308478..7308502 (25 bp)
CTTTTTATGTGAGGTCAAGCAAGAT
LOC_Os12g13130
Os.27233.1.S1_at--943--2791Chr12:7308498..7308522 (25 bp)
AAGATAATTTTTCGATGCCTTGCCC
LOC_Os12g13130
Os.27233.1.S1_at--983--6351Chr12:7308511..7308535 (25 bp)
GATGCCTTGCCCAAGCTGGAGTCTT
LOC_Os12g13130
Os.27233.1.S1_at--223--3251Chr12:7308522..7308546 (25 bp)
CAAGCTGGAGTCTTGTTGACCTCTG
LOC_Os12g13130
Os.27233.1.S1_at--493--8931Chr12:7308538..7308562 (25 bp)
TGACCTCTGTAGTTCATCCCTTGAA
LOC_Os12g13130
Os.27233.1.S1_at--11--8331Chr12:7308648..7308672 (25 bp)
GGCTCTAATTTGAATCCTATGGGCT
LOC_Os12g13130
Os.27233.1.S1_at--986--4291Chr12:7308663..7308687 (25 bp)
CCTATGGGCTTAGATTAATGGAATA
LOC_Os12g13130
Target Sequence 
ATTCTTGCACCAGAGGGAAATGAAGAAAGGCGGTCAAAATTTAAGACGAATTTCGAAAGTTGTCCAAAAGAAAAAACCAT
CTTAGGTACCTAATTCCATGCCCTGCTTNTTCCCTATGCAGCCCCTCATGCAGATGCAATCGTCAAGAAGCAAACGTGTG
CTTTTTATGTGAGGTCAAGCAAGATAATTTTTCGATGCCTTGCCCAAGCTGGAGTCTTGTTGACCTCTGTAGTTCATCCC
TTGAAATGTGGGTTTACATGACCGTTTACAGACAATCTCATGAGACTATATGTACATTGAAGAATGAAAATGTGTATCCA
ATATTTAGTAGGCTCTAATTTGAATCCTATGGGCTTAGATTAATGGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis