Browse Element(s) Details


OsAffx.7575.3.S1_x_at

Description tigr:9640.m01267
TID=OsAffx.7575.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g131309/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13100Os.18645.1.S1_at10/1112+7283434..7284983WW domain containing protein, expressed
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein
LOC_Os12g13160NANA12+7327780..7328511expressed protein
LOC_Os12g13170Os.2234.1.A1_a_at11/1112+7329479..7335516bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7575.3.S1_x_at--11--2971Chr12:7305990..7306014 (25 bp)
AATGGCGCTGTGGTTTCTGCAAGAA
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--113--5351Chr12:7306030..7306054 (25 bp)
GAAGTTCCTTGATCAGCATTTTCAC
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--691--9571NONE
TCTTGTGGATAATAGCCTTGCAGAT
NONE
OsAffx.7575.3.S1_x_at--1016--1671Chr12:7307246..7307361 (25 bp)
AGCCGTCTTCATGAATTTCTCTTGC
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--555--10311Chr12:7307352..7307376 (25 bp)
TTTCTCTTGCGCCAATTCTGTGATG
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--207--2891Chr12:7307413..7307722 (25 bp)
AAGGTGGCAGGTTTAAGGTTATCAT
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--939--2191Chr12:7307968..7307992 (25 bp)
ACAAACAGATTCTACCTGGCTCTCT
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--803--3911Chr12:7307983..7308007 (25 bp)
CTGGCTCTCTGTGCCTTAACAATAG
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--451--2051Chr12:7308009..7308033 (25 bp)
ACTTTTGCCACTGTTCTATCTCATA
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--952--271Chr12:7308031..7308417 (25 bp)
ATAGTATTCTTGCACCAGAGCCATG
LOC_Os12g13130
OsAffx.7575.3.S1_x_at--246--4891NONE
GCTTTTTATGTGAGTTCATCCCTTG
NONE
Target Sequence 
AATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAAT
CTTGTGGATAATAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATGAATTTCTCTT
GCGCCAATTCTGTGATGCCCACACATGCAAGAATGGCTCTAAACCTTTCCCCAAAGGTGGCAGGTTTAAGGTTATCATAC
TTTCATATAGCATTTACACTTTAAACATGCCAAATAAACAAACAAACAGATTCTACCTGGCTCTCTGTGCCTTAACAATA
GTACTTTTGCCACTGTTCTATCTCATAGTATTCTTGCACCAGAGCCATGCCCTGCTTCTTCCCTATGCAGCCCCTCATGC
AGATGCAATCGTCAAGAAGCAAACGTGTGCTTTTTATGTGAGTTCATCCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7575.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis