Browse Element(s) Details


OsAffx.1965.1.S1_at

Description tigr:9629.m00857
TID=OsAffx.1965.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0914011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein
LOC_Os01g09160NANA1+4596579..4599829transposon protein, putative, unclassified
LOC_Os01g09170NANA1+4600649..4606804transposon protein, putative, unclassified
LOC_Os01g09180NANA1+4607869..4608850transposon protein, putative, unclassified
LOC_Os01g09190Os.30909.1.S1_at11/111+4611693..4612627expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1965.1.S1_at--403--371Chr01:4587763..4587787 (25 bp)
ATCAATCAGATCAGCAACACAGACG
LOC_Os01g09140
OsAffx.1965.1.S1_at--642--391Chr01:4587772..4587796 (25 bp)
ATCAGCAACACAGACGAAGGCCGAG
LOC_Os01g09140
OsAffx.1965.1.S1_at--761--6251Chr01:4587877..4587901 (25 bp)
GATGTCGCCGGATCCTCCGGAACTG
LOC_Os01g09140
OsAffx.1965.1.S1_at--71--4351Chr01:4587889..4587913 (25 bp)
TCCTCCGGAACTGCGGGACGGGCTA
LOC_Os01g09140
OsAffx.1965.1.S1_at--1093--2771Chr01:4587992..4588016 (25 bp)
AAGAGGGCGGTGTCCGAGATCCCGG
LOC_Os01g09140
OsAffx.1965.1.S1_at--752--4191Chr01:4588044..4588068 (25 bp)
CCCTGGAGATGGTGAAGCGTTACAG
LOC_Os01g09140
OsAffx.1965.1.S1_at--595--7351Chr01:4588055..4588079 (25 bp)
GTGAAGCGTTACAGGTGCAACTACT
LOC_Os01g09140
OsAffx.1965.1.S1_at--544--1031Chr01:4588067..4588091 (25 bp)
AGGTGCAACTACTGGGAGAACCCTA
LOC_Os01g09140
OsAffx.1965.1.S1_at--89--8651Chr01:4588079..4588103 (25 bp)
TGGGAGAACCCTAACTTCGCCGACT
LOC_Os01g09140
OsAffx.1965.1.S1_at--258--10651Chr01:4588094..4588118 (25 bp)
TTCGCCGACTTGCTGCGGGATCATG
LOC_Os01g09140
OsAffx.1965.1.S1_at--714--4671Chr01:4588108..4588132 (25 bp)
GCGGGATCATGGTCCGCTCTTCGCC
LOC_Os01g09140
Target Sequence 
ATCAATCAGATCAGCAACACAGACGAAGGCCGAGGCGCCGCCGCCGCCGCAGCAGCAGCAGCCGGACGTGGCGGCCGAGA
TGGAGGAGGAGGAGTACTGGGATCGGCGGCGCCCGATGTCGCCGGATCCTCCGGAACTGCGGGACGGGCTACGGCGGCTG
AAGGAAGCCGAGCGCGCCATGGGCGTCGACGAGAGGGCCGCCGCCGCCGTGTTCGCGAGGCCGGGGCAGAAGAGGGCGGT
GTCCGAGATCCCGGAGGGGTGGTCGGCGGAGTGGGACGACTCCCTGGAGATGGTGAAGCGTTACAGGTGCAACTACTGGG
AGAACCCTAACTTCGCCGACTTGCTGCGGGATCATGGTCCGCTCTTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis