Browse Element(s) Details


OsAffx.19666.1.S1_at

Description tigr:9640.m01405
TID=OsAffx.19666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein kinase homolog F21P8.130 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1448011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14450OsAffx.19665.1.S1_at10/1112+8241493..8242711hypothetical protein
LOC_Os12g14460Os.27691.1.S1_x_at1/1112+8247715..8252280retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.2.S1_x_at3/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14470Os.27691.1.S1_x_at1/1112+8252532..8253683retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14480OsAffx.19666.1.S1_at11/1112+8263718..8267530Protein kinase domain containing protein
LOC_Os12g14490NANA12+8269372..8271512hypothetical protein
LOC_Os12g14500OsAffx.19668.1.S1_at10/1112+8275679..8279789hypothetical protein
LOC_Os12g14510OsAffx.31741.1.S1_at11/1112+8280787..8281454hypothetical protein
LOC_Os12g14520NANA12+8285550..8285942hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0005739cellular_componentmitochondrion
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19666.1.S1_at--131--10231Chr12:8264705..8264729 (25 bp)
TTGGTCCTCCCGATTCCGAATAATT
LOC_Os12g14480
OsAffx.19666.1.S1_at--663--3591Chr12:8264309..8264333 (25 bp)
CATTAGTGGAATGAGCTATTCTGGA
LOC_Os12g14480
OsAffx.19666.1.S1_at--978--4871Chr12:8264295..8264319 (25 bp)
GCTATTCTGGAAGAGATGCTCGTCA
LOC_Os12g14480
OsAffx.19666.1.S1_at--598--10611Chr12:8264291..8264315 (25 bp)
TTCTGGAAGAGATGCTCGTCATCAA
LOC_Os12g14480
OsAffx.19666.1.S1_at--441--9551Chr12:8263928..8263952 (25 bp)
TCTATCTGGAGGTATACACAAGCTA
LOC_Os12g14480
OsAffx.19666.1.S1_at--1017--9851Chr12:8263914..8263938 (25 bp)
TACACAAGCTATTCGATCCATCACT
LOC_Os12g14480
OsAffx.19666.1.S1_at--449--6371Chr12:8263900..8263924 (25 bp)
GATCCATCACTGTGTGACGAGTCTC
LOC_Os12g14480
OsAffx.19666.1.S1_at--1146--7451Chr12:8263889..8263913 (25 bp)
GTGTGACGAGTCTCAACTGAAGGAG
LOC_Os12g14480
OsAffx.19666.1.S1_at--171--6991Chr12:8263833..8263857 (25 bp)
GTACCCAGAACAAACCGTCAGACAG
LOC_Os12g14480
OsAffx.19666.1.S1_at--749--2191Chr12:8263824..8263848 (25 bp)
ACAAACCGTCAGACAGGCCAACAAT
LOC_Os12g14480
OsAffx.19666.1.S1_at--352--8451Chr12:8263809..8263833 (25 bp)
GGCCAACAATGCCTGATGTTCTTGA
LOC_Os12g14480
Target Sequence 
TTGGTCCTCCCGATTCCGAATAATTCAAGGGATAACTCAGGGAATTATTTACCTTCACACACACTCTGGGAAACCTACTA
TAGTCCATCTGGACCTGAAACCAGACAACATCCTCCTGGATTTAGACATGAACCCTAAAATTGGTGATTTTGGACTAGCT
AAAGTATTAAAAGATGATGTGGTCAATGCAAGCGTTCGTGGAACATTGGGCTATATGCCACCAGAATATATTGTTGAAGG
TGTTATCTCAGTAAAGAATGATGTCTACGGTTTTGGCGTAACACTGCTTCAGACCATTAGTGGAATGAGCTATTCTGGAA
GAGATGCTCGTCATCAAGCTTCCATTGAGTGGGCATGGAACGTACGTCTATCTGGAGGTATACACAAGCTATTCGATCCA
TCACTGTGTGACGAGTCTCAACTGAAGGAGATCAAAAGATGCATGGAGATTGGACTGCTCTGTACCCAGAACAAACCGTC
AGACAGGCCAACAATGCCTGATGTTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19666.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis