Browse Element(s) Details


OsAffx.31741.1.S1_at

Description tigr:9640.m01408
TID=OsAffx.31741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1451011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14480OsAffx.19666.1.S1_at11/1112+8263718..8267530Protein kinase domain containing protein
LOC_Os12g14490NANA12+8269372..8271512hypothetical protein
LOC_Os12g14500OsAffx.19668.1.S1_at10/1112+8275679..8279789hypothetical protein
LOC_Os12g14510OsAffx.31741.1.S1_at11/1112+8280787..8281454hypothetical protein
LOC_Os12g14520NANA12+8285550..8285942hypothetical protein
LOC_Os12g14530OsAffx.6017.1.S1_at1/1112+8293493..8296441hypothetical protein
LOC_Os12g14540Os.51323.1.S1_at11/1112+8298821..8299399expressed protein
LOC_Os12g14550OsAffx.31742.1.S1_at10/1112+8303801..8305148hypothetical protein
LOC_Os12g14550Os.27790.1.A1_at3/1112+8303801..8305148hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31741.1.S1_at--783--4571Chr12:8280871..8280895 (25 bp)
GCGCTGGTCAGTCGCCGGTCACCTT
LOC_Os12g14510
OsAffx.31741.1.S1_at--573--10591Chr12:8280944..8280968 (25 bp)
TTCTCCCCATGCTAGAGGAAGGTGT
LOC_Os12g14510
OsAffx.31741.1.S1_at--775--931Chr12:8280959..8280983 (25 bp)
AGGAAGGTGTTGGAGCTCTTGCCCT
LOC_Os12g14510
OsAffx.31741.1.S1_at--103--1311Chr12:8280993..8281017 (25 bp)
AGATGTCGACCTCGGACAAGAAAGG
LOC_Os12g14510
OsAffx.31741.1.S1_at--629--8512Chr12:8281128..8281152 (25 bp)
TGGAGGGACCGCACGCGCACGGGAC
LOC_Os12g14510
OsAffx.31741.1.S1_at--153--5791Chr12:8281150..8281174 (25 bp)
GACGAACGGAGCAGGCACCAGGATC
LOC_Os12g14510
OsAffx.31741.1.S1_at--866--3371Chr12:8281165..8281189 (25 bp)
CACCAGGATCGGAGAGCTGTCGTGC
LOC_Os12g14510
OsAffx.31741.1.S1_at--1028--5991Chr12:8281176..8281200 (25 bp)
GAGAGCTGTCGTGCGCGTGGTAGAG
LOC_Os12g14510
OsAffx.31741.1.S1_at--1120--4651Chr12:8281190..8281214 (25 bp)
GCGTGGTAGAGCTGCCGCATGGCCG
LOC_Os12g14510
OsAffx.31741.1.S1_at--516--5072Chr12:8281226..8281247 (22 bp)
GCAGCGGCACTGTTCTTGGCCGAAA
LOC_Os12g14510
OsAffx.31741.1.S1_at--812--4691Chr12:8281229..8281384 (25 bp)
GCGGCACTGTTCTTGGCCGAAAAGG
LOC_Os12g14510
Target Sequence 
GCGCTGGTCAGTCGCCGGTCACCTTCTCCGTCTCCTGCGCCATCGGCCGCAAGCGCCACTGCCTCTTCCCGCCTTCTCCC
CATGCTAGAGGAAGGTGTTGGAGCTCTTGCCCTTCGCCGCGCAGATGTCGACCTCGGACAAGAAAGGACGGGGAGCACCT
CCAGGCGGCAGCGCTTGGAGGAGGTGGTGGTGGCGGCTGAGGCGGAGGCGGAGGCGGACAAGGGCGTAGGAGAGGAGGGG
CGAGGCTTGGAGGGGGCTGGAGGGACCGCACGCGCACGGGACGAACGGAGCAGGCACCAGGATCGGAGAGCTGTCGTGCG
CGTGGTAGAGCTGCCGCATGGCCGCAGCCTCTGCGGCAGCGGCACTGTTCTTGGCCGAAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis