Browse Element(s) Details

Os.27790.1.A1_at

Description

gb:AK119263.1
DB_XREF= gi:37988886
TID=Os.27790.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A03, full insert sequence.
FL= gb:AK119263.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25470	4/11	hypothetical protein
LOC_Os12g14550	3/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25410	OsAffx.27821.1.S1_at	10/11	6	+	14875516..14875875	hypothetical protein
LOC_Os06g25420	OsAffx.15607.1.S1_at	11/11	6	+	14878479..14878996	hypothetical protein
LOC_Os06g25420	OsAffx.28340.2.S1_at	3/11	6	+	14878479..14878996	hypothetical protein
LOC_Os06g25439	Os.12008.1.S1_at	11/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.23283.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.21209.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25460	Os.12008.3.S1_at	4/11	6	+	14892069..14892284	hypothetical protein
LOC_Os06g25470	Os.27790.1.A1_at	4/11	6	+	14894989..14895649	hypothetical protein
LOC_Os06g25480	NA	NA	6	+	14898156..14901071	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25490	NA	NA	6	+	14901564..14905195	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25500	OsAffx.4936.1.S1_at	10/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.50255.1.S1_at	6/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.27790.2.A1_x_at	4/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	OsAffx.20354.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.26561.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.46995.1.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.49405.2.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25510	NA	NA	6	+	14917278..14917625	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27790.1.A1_at--230--831	1	Chr06:14895636..14895660 (25 bp)	GGCTATGGTGCATGGCGAACTGCAT	NONE
Os.27790.1.A1_at--638--87	2	Chr12:8304500..8304524 (25 bp)	ATGGCGAACTGCATGGCGTTGACGA	LOC_Os12g14550
Os.27790.1.A1_at--342--467	2	Chr12:8304551..8304575 (25 bp)	GCGGTAGCTGATGCACGTCAGAGAC	LOC_Os12g14550
Os.27790.1.A1_at--65--55	2	Chr12:8304599..8304998 (25 bp)	ATCCCGATATGTGGCTCGCTATGTT	LOC_Os12g14550
Os.27790.1.A1_at--868--157	1	Chr06:14895096..14895120 (25 bp)	AGCTCACAGCAAAAACCTGCATCCA	LOC_Os06g25470
Os.27790.1.A1_at--348--335	2	Chr12:8305141..8305165 (25 bp)	CACCCTGAACCTGAAATGAAGCCTA	NONE
Os.27790.1.A1_at--540--67	2	Chr12:8305156..8305180 (25 bp)	ATGAAGCCTACCTAGTACAGTGATA	NONE
Os.27790.1.A1_at--440--525	1	Chr06:14894933..14894957 (25 bp)	GAATCTACATATGTACTTCTGTGGT	NONE
Os.27790.1.A1_at--795--1081	1	Chr06:14894889..14894913 (25 bp)	TTGTGAACCATGGTCGGAGCCAAGA	NONE
Os.27790.1.A1_at--81--587	1	Chr06:14894873..14894897 (25 bp)	GAGCCAAGAAGCTATCTCTGTTTTG	NONE
Os.27790.1.A1_at--769--509	2	Chr12:8305301..8305325 (25 bp)	GCACTTTTGTGCCTGGTAATTCTGA	NONE

Target Sequence

GGCTATGGTGCATGGCGAACTGCATGGCGTTGACGAGGTTCTCGGTGGGAGTACGAGCCGGGGCGGTAGCTGATGCACGT
CAGAGACGGGGAAGCTTCCTGCCCTTCGTCATCCCGATATGTGGCTCGCTATGTTGATGGAATCATGGAACAAGGAGAAG
GAACAAGCTCACAGCAAAAACCTGCATCCAAGAAGGCATGTGAAAGGAATCAACTCCATCCGGAAGGTGCAAGCTCACAG
GCGGCACCTGCATCCAAGAAGGCATGTGCAAGGAAGCTCACCCTGAACCTGAAATGAAGCCTACCTAGTACAGTGATAGT
ACAGTTGTGAATCTACATATGTACTTCTGTGGTAGTACAGTTGTGAATCTATTTGTGAACCATGGTCGGAGCCAAGAAGC
TATCTCTGTTTTGGTGCTGTTCTAAAACAAGTGTGATGGCACTTTTGTGCCTGGTAATTCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis