Browse Element(s) Details


OsAffx.23283.1.S1_at

Description tigr:9629.m01745
TID=OsAffx.23283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1798011/11hypothetical protein
LOC_Os06g254391/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17450Os.28943.1.S1_x_at4/111+10028759..10032001retrotransposon protein, putative, unclassified
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified
LOC_Os01g17470Os.36802.1.S1_at11/111+10045051..10047087Plastocyanin-like domain containing protein, expressed
LOC_Os01g17970OsAffx.442.1.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_s_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.442.1.S1_at2/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17980OsAffx.23283.1.S1_at11/111+10055409..10056675hypothetical protein
LOC_Os01g17990OsAffx.22267.2.S1_x_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g17990OsAffx.22267.1.S1_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g18000Os.27639.1.S1_x_at9/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18000OsAffx.8980.1.S1_at6/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18010OsAffx.22265.1.S1_at10/111+10076116..10077094hypothetical protein
LOC_Os01g18020OsAffx.19614.1.A1_at1/111+10077587..10079052hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23283.1.S1_at--397--1274Chr07:15585906..15585926 (21 bp)
AGATATGTGTCATTCGTGACGGCCG
NONE
OsAffx.23283.1.S1_at--151--10711Chr01:10055766..10055790 (25 bp)
TTGCCGCCCGTTACAGATGGCCAAA
LOC_Os01g17980
OsAffx.23283.1.S1_at--1025--6211Chr01:10055751..10055775 (25 bp)
GATGGCCAAACCTGTGCTAATGGGT
LOC_Os01g17980
OsAffx.23283.1.S1_at--577--7951Chr01:10055694..10055718 (25 bp)
GGATCATGTCATAGATGTCAGCATT
LOC_Os01g17980
OsAffx.23283.1.S1_at--843--2411Chr01:10055667..10055691 (25 bp)
AAAACATCTTTTGTCACCTCTCCAT
LOC_Os01g17980
OsAffx.23283.1.S1_at--785--9231Chr01:10055647..10055671 (25 bp)
TCCATGCTGTTGTTGTCCTCCATAT
LOC_Os01g17980
OsAffx.23283.1.S1_at--483--9251Chr01:10055632..10055656 (25 bp)
TCCTCCATATGGATTCAGATCCCCA
LOC_Os01g17980
OsAffx.23283.1.S1_at--920--9591Chr01:10055592..10055616 (25 bp)
TCATCGCCAAATCTCCGAGTTCTGG
LOC_Os01g17980
OsAffx.23283.1.S1_at--335--7991Chr01:10055566..10055590 (25 bp)
GGATGATTATTTCTGCCGGGCACCC
LOC_Os01g17980
OsAffx.23283.1.S1_at--138--1271Chr01:10055530..10055554 (25 bp)
AGATCATAAACTTGCTCTCCTCGAA
LOC_Os01g17980
OsAffx.23283.1.S1_at--159--711Chr01:10055446..10055470 (25 bp)
ATGATCATGCAAACGACCCAACAAT
LOC_Os01g17980
Target Sequence 
AGATATGTGTCATTCGTGACGGCCGGATGCCCGATTGAGATATTTTACCACATCACTGACCTTTGCTCTGTGATGGGGGT
TCTACCCGATAGAGATGAGGCTTGCCGCCCGTTACAGATGGCCAAACCTGTGCTAATGGGTAAACGGGGTGCTAGAGATG
ACGATGACATTGTGGATCATGTCATAGATGTCAGCATTGCAAAACATCTTTTGTCACCTCTCCATGCTGTTGTTGTCCTC
CATATGGATTCAGATCCCCACCCTCGACAATATCCTCATCGCCAAATCTCCGAGTTCTGGCGGATGATTATTTCTGCCGG
GCACCCGGCACCGGCGGAGATCATAAACTTGCTCTCCTCGAAACCCTACCTACCCAACAAAATCAACAACCAGATCAATG
ATCCCCCTCTTAAAAAAAATCATGATCATGCAAACGACCCAACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis