Browse Element(s) Details


OsAffx.22267.2.S1_x_at

Description tigr:9629.m01746
TID=OsAffx.22267.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1799011/11transcription elongation factor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g17460NANA1+10032622..10038585retrotransposon protein, putative, unclassified
LOC_Os01g17470Os.36802.1.S1_at11/111+10045051..10047087Plastocyanin-like domain containing protein, expressed
LOC_Os01g17970OsAffx.442.1.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_s_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.30226.2.S1_x_at4/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17970OsAffx.442.1.S1_at2/111+10053714..10054772retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g17980OsAffx.23283.1.S1_at11/111+10055409..10056675hypothetical protein
LOC_Os01g17990OsAffx.22267.2.S1_x_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g17990OsAffx.22267.1.S1_at11/111+10058220..10061880transcription elongation factor, putative
LOC_Os01g18000Os.27639.1.S1_x_at9/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18000OsAffx.8980.1.S1_at6/111+10068189..10073138transposon protein, putative, unclassified
LOC_Os01g18010OsAffx.22265.1.S1_at10/111+10076116..10077094hypothetical protein
LOC_Os01g18020OsAffx.19614.1.A1_at1/111+10077587..10079052hypothetical protein
LOC_Os01g18030NANA1+10085168..10086339hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22267.2.S1_x_at--83--6971Chr01:10060557..10060581 (25 bp)
GTAGCTGCTGACTGGGTAGGACCTT
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--374--6931Chr01:10060572..10060596 (25 bp)
GTAGGACCTTCTTCTGCAAATGCAG
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--229--9051Chr01:10060753..10060777 (25 bp)
TGCAGACACTTCTCCAGACATATCA
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--336--8191Chr01:10060792..10060816 (25 bp)
GGAAGATGACTTCGGCCTTCCAACT
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--229--751Chr01:10060827..10060851 (25 bp)
ATGTGGGAGCGTTCTTTTTGCCCCA
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--945--4771Chr01:10060856..10060879 (24 bp)
GCTGCCGAGCAATATGTATCTGAGT
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--602--2751Chr01:10061286..10061310 (25 bp)
AAGACAACATGGTCCTCCAATGAGG
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--282--5551Chr01:10061328..10061598 (25 bp)
GAAACTGGCTCAACATCATGCTATA
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--1118--2551Chr01:10061612..10061636 (25 bp)
AACGTCCTATTGCTGTTGTCAGAAA
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--1011--5551Chr01:10061633..10061657 (25 bp)
GAAAGCCACTCCCTGATCATGTGAG
LOC_Os01g17990
OsAffx.22267.2.S1_x_at--234--2471Chr01:10061800..10061824 (25 bp)
AACACCGACATAGCTGATTTGCGAC
LOC_Os01g17990
Target Sequence 
GTAGCTGCTGACTGGGTAGGACCTTCTTCTGCAAATGCAGACACTTCTCCAGACATATCAAATCCATCTACCGTGGAAGA
TGACTTCGGCCTTCCAACTCCACCAATGGATGTGGGAGCGTTCTTTTTGCCCCAGTCCGCTGCCGAGCAATATGTATCTG
AGTTTTTACATAAAGCGGATGATGATGATGACGAAAGTCTAATACCCAATGCTAAAAATGATTGTGGTTTTGGCGGGTAC
AAGATGGAGATTGCAAAACCTGTAGCAAATATGGATGAAAACATATTGCGCAAGGGGAAAGATTTATCAAGACAACATGG
TCCTCCAATGAGGCAAGCAAATCTACAGATGAAACTGGCTCAACATCATGCTATAGCCATAACAGAACAACGTCCTATTG
CTGTTGTCAGAAAGCCACTCCCTGATCATGTGAGTAAGTTGGAAAGGCAAGCAACAATATTAGAAGGCTGCAAGGTAGGT
ATAGGGAAGAGAAACAACACCGACATAGCTGATTTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22267.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis