Browse Element(s) Details

Os.12008.1.S1_at

Description

gb:AK105919.1
DB_XREF= gi:32991128
TID=Os.12008.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0419B01.17 (P0419B01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A02, full insert sequence.
FL= gb:AK105919.1 gb:AK070247.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25439	11/11	NmrA-like family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25360	Os.17546.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.31497.2.S1_x_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	OsAffx.19614.1.A1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360	Os.47722.1.S1_at	1/11	6	+	14855086..14857472	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25370	NA	NA	6	+	14857883..14859919	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25380	NA	NA	6	+	14861706..14864341	hypothetical protein
LOC_Os06g25390	OsAffx.15606.1.S1_at	11/11	6	+	14865756..14865971	hypothetical protein
LOC_Os06g25410	OsAffx.27821.1.S1_at	10/11	6	+	14875516..14875875	hypothetical protein
LOC_Os06g25420	OsAffx.15607.1.S1_at	11/11	6	+	14878479..14878996	hypothetical protein
LOC_Os06g25420	OsAffx.28340.2.S1_at	3/11	6	+	14878479..14878996	hypothetical protein
LOC_Os06g25439	Os.12008.1.S1_at	11/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.23283.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25439	OsAffx.21209.1.S1_at	1/11	6	+	14879266..14891857	NmrA-like family protein, expressed
LOC_Os06g25460	Os.12008.3.S1_at	4/11	6	+	14892069..14892284	hypothetical protein
LOC_Os06g25470	Os.27790.1.A1_at	4/11	6	+	14894989..14895649	hypothetical protein
LOC_Os06g25480	NA	NA	6	+	14898156..14901071	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25490	NA	NA	6	+	14901564..14905195	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25500	OsAffx.4936.1.S1_at	10/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.50255.1.S1_at	6/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.27790.2.A1_x_at	4/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	OsAffx.20354.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.26561.1.S1_at	2/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.46995.1.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified
LOC_Os06g25500	Os.49405.2.S1_x_at	1/11	6	+	14905525..14914483	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12008.1.S1_at--533--29	1	Chr06:14880953..14880977 (25 bp)	ATACTCGTAAGTTCCATTTTGGTCA	LOC_Os06g25439
Os.12008.1.S1_at--434--833	1	Chr06:14880924..14880948 (25 bp)	GGCTGCGATGGGTCAACTGTTGAAT	LOC_Os06g25439
Os.12008.1.S1_at--602--361	2	Chr04:889366..889785 (25 bp)	CTTGTTTGGTTTAGTGCTGGTCGCA	NONE
Os.12008.1.S1_at--518--801	1	Chr06:14880794..14880818 (25 bp)	GGAGGCCTGACTGAACAACCACCAA	LOC_Os06g25439
Os.12008.1.S1_at--232--617	1	Chr06:14879627..14879650 (24 bp)	GAGGATACACTTTACGAGGGCTCCA	LOC_Os06g25439
Os.12008.1.S1_at--653--613	1	Chr06:14879612..14879636 (25 bp)	GAGGGCTCCATATCGAGACAGCAAG	LOC_Os06g25439
Os.12008.1.S1_at--1035--871	1	Chr06:14879532..14879556 (25 bp)	TGTCGAGATTGTCACCCGAGCTGAA	LOC_Os06g25439
Os.12008.1.S1_at--984--589	1	Chr06:14879515..14879539 (25 bp)	GAGCTGAAGCTCACAATCGTCCTCT	LOC_Os06g25439
Os.12008.1.S1_at--290--305	1	Chr06:14879501..14879525 (25 bp)	AATCGTCCTCTCAAGGATCTGTTTG	LOC_Os06g25439
Os.12008.1.S1_at--239--897	1	Chr06:14879441..14879465 (25 bp)	TGAACAAGTTGTTCCGGCCCTGAAC	LOC_Os06g25439
Os.12008.1.S1_at--454--745	1	Chr06:14879375..14879399 (25 bp)	GTGTCAGGGTGTTCATACCTAGTTA	LOC_Os06g25439

Target Sequence

ATACTCGTAAGTTCCATTTTGGTCAATGGGGCTGCGATGGGTCAACTGTTGAATCCAGCATATACTGTGCTCAACTTGTT
TGGTTTAGTGCTGGTCGCAAAGCTGCAGGCGGAGAAACATATCAGGTCATCAGGAATAAATTACACCATTATAAGGCCTG
GAGGCCTGACTGAACAACCACCAACAGGGAATATAGTCATGGAGCCAGAGGATACACTTTACGAGGGCTCCATATCGAGA
CAGCAAGTCGCAGAAGTAGCTGTGGAGGCATTGTTATGCCGAGAGGAATCTTCCTACAAAGTTGTCGAGATTGTCACCCG
AGCTGAAGCTCACAATCGTCCTCTCAAGGATCTGTTTGCTTCTATTAAGCAAAGCTGAGTAACGGAGCACAACTGAACAA
GTTGTTCCGGCCCTGAACTTCAAAGGGGGCTAGCATTATTCCAGAAATTGTATAGTGATGTGTCAGGGTGTTCATACCTA
GTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis