Browse Element(s) Details


OsAffx.27821.1.S1_at

Description tigr:9634.m02518
TID=OsAffx.27821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2541010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25350Os.52447.1.S1_x_at2/116+14849246..14852102retrotransposon, putative, centromere-specific
LOC_Os06g25350OsAffx.25367.1.S1_at1/116+14849246..14852102retrotransposon, putative, centromere-specific
LOC_Os06g25360Os.17546.2.S1_x_at1/116+14855086..14857472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360Os.31497.2.S1_x_at1/116+14855086..14857472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360OsAffx.19614.1.A1_at1/116+14855086..14857472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25360Os.47722.1.S1_at1/116+14855086..14857472retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25370NANA6+14857883..14859919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25380NANA6+14861706..14864341hypothetical protein
LOC_Os06g25390OsAffx.15606.1.S1_at11/116+14865756..14865971hypothetical protein
LOC_Os06g25410OsAffx.27821.1.S1_at10/116+14875516..14875875hypothetical protein
LOC_Os06g25420OsAffx.15607.1.S1_at11/116+14878479..14878996hypothetical protein
LOC_Os06g25420OsAffx.28340.2.S1_at3/116+14878479..14878996hypothetical protein
LOC_Os06g25439Os.12008.1.S1_at11/116+14879266..14891857NmrA-like family protein, expressed
LOC_Os06g25439OsAffx.23283.1.S1_at1/116+14879266..14891857NmrA-like family protein, expressed
LOC_Os06g25439OsAffx.21209.1.S1_at1/116+14879266..14891857NmrA-like family protein, expressed
LOC_Os06g25460Os.12008.3.S1_at4/116+14892069..14892284hypothetical protein
LOC_Os06g25470Os.27790.1.A1_at4/116+14894989..14895649hypothetical protein
LOC_Os06g25480NANA6+14898156..14901071retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27821.1.S1_at--447--5211Chr06:14876028..14876052 (25 bp)
GAATTCTCATTGTTCGTCTACACCA
NONE
OsAffx.27821.1.S1_at--966--10011Chr06:14875829..14875853 (25 bp)
TAGAGAATCGGCTAAACACCCGGTT
LOC_Os06g25410
OsAffx.27821.1.S1_at--1015--1792Chr12:14334953..14334973 (21 bp)
ACCCGGTTCCTAGGTGGTGCATCTA
NONE
OsAffx.27821.1.S1_at--506--8611Chr06:14875798..14875822 (25 bp)
TGGTGCATCTACTTCCTACAATAAT
LOC_Os06g25410
OsAffx.27821.1.S1_at--872--4991Chr06:14875769..14875793 (25 bp)
GCATGTATGGTGTTTCATCGGCTTA
LOC_Os06g25410
OsAffx.27821.1.S1_at--132--6591Chr06:14875716..14875740 (25 bp)
GATTGGCCTATGAGAAGTACCTACA
LOC_Os06g25410
OsAffx.27821.1.S1_at--1093--2231Chr06:14875694..14875718 (25 bp)
ACAATTCTAAATTCATCCCTACGCC
LOC_Os06g25410
OsAffx.27821.1.S1_at--707--9851Chr06:14875665..14875689 (25 bp)
TACAACTCAGATCGCTACGACACTG
LOC_Os06g25410
OsAffx.27821.1.S1_at--1159--6931Chr06:14875628..14875652 (25 bp)
GTAGTAGAGGCCGATCAAACCGCTA
LOC_Os06g25410
OsAffx.27821.1.S1_at--205--2371Chr06:14875612..14875636 (25 bp)
AAACCGCTACAACATTGCCGGTCAG
LOC_Os06g25410
OsAffx.27821.1.S1_at--355--631Chr06:14875553..14875577 (25 bp)
ATGCTGCCCAGGCTATAGCTGGAAA
LOC_Os06g25410
Target Sequence 
GAATTCTCATTGTTCGTCTACACCACATCTAAGAAAACCATGGATGCTTGCATGGGTGAGTTAGAGAATCGGCTAAACAC
CCGGTTCCTAGGTGGTGCATCTACTTCCTACAATAATGAGCGCATGTATGGTGTTTCATCGGCTTATAGTATACCATCAG
TACCTATACAACAAGATTGGCCTATGAGAAGTACCTACAATTCTAAATTCATCCCTACGCCACAATACAACTCAGATCGC
TACGACACTGCCGGTCAGACTGGTAGTAGAGGCCGATCAAACCGCTACAACATTGCCGGTCAGATCGGACGTGGTGGTCG
GTCCAATTGGGAGGGCAATGCTGCCCAGGCTATAGCTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis