Browse Element(s) Details


OsAffx.31742.1.S1_at

Description tigr:9640.m01412
TID=OsAffx.31742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1455010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14500OsAffx.19668.1.S1_at10/1112+8275679..8279789hypothetical protein
LOC_Os12g14510OsAffx.31741.1.S1_at11/1112+8280787..8281454hypothetical protein
LOC_Os12g14520NANA12+8285550..8285942hypothetical protein
LOC_Os12g14530OsAffx.6017.1.S1_at1/1112+8293493..8296441hypothetical protein
LOC_Os12g14540Os.51323.1.S1_at11/1112+8298821..8299399expressed protein
LOC_Os12g14550OsAffx.31742.1.S1_at10/1112+8303801..8305148hypothetical protein
LOC_Os12g14550Os.27790.1.A1_at3/1112+8303801..8305148hypothetical protein
LOC_Os12g14570Os.12008.3.S1_at3/1112+8314938..8315285hypothetical protein
LOC_Os12g14580OsAffx.7594.1.S1_at11/1112+8325263..8326965Tetraspanin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31742.1.S1_at--486--2351Chr12:8303848..8303872 (25 bp)
AAAGCGGCTGAGAGCTCGGTGCTTC
LOC_Os12g14550
OsAffx.31742.1.S1_at--243--3791Chr12:8303862..8303886 (25 bp)
CTCGGTGCTTCAGCGTCGGAGCTCG
LOC_Os12g14550
OsAffx.31742.1.S1_at--266--7691Chr12:8303893..8303917 (25 bp)
GGGTAATGCCATAAGTGGCCTGCGT
LOC_Os12g14550
OsAffx.31742.1.S1_at--768--3551Chr12:8303902..8303926 (25 bp)
CATAAGTGGCCTGCGTGTCGACGTT
LOC_Os12g14550
OsAffx.31742.1.S1_at--941--2711Chr12:8303931..8303955 (25 bp)
AAGCAGGTTCTGGTAGCGTCGGAGC
LOC_Os12g14550
OsAffx.31742.1.S1_at--907--2772Chr12:8304049..8304073 (25 bp)
AAGAGATGGAAGACAGGGCCTACAT
LOC_Os12g14550
OsAffx.31742.1.S1_at--120--2132Chr12:8304061..8304085 (25 bp)
ACAGGGCCTACATGTCAGCGAGGTG
LOC_Os12g14550
OsAffx.31742.1.S1_at--494--7631Chr12:8304086..8304110 (25 bp)
GGGACAGACATTTTGGGCAATACGA
LOC_Os12g14550
OsAffx.31742.1.S1_at--165--2251Chr12:8304110..8304130 (21 bp)
AAATTGAGTCTCATTCTGGTGGCTC
LOC_Os12g14550
OsAffx.31742.1.S1_at--238--9531NONE
TCTCATTCTGGTGGCTCGCTATGTT
NONE
OsAffx.31742.1.S1_at--789--9691Chr12:8305032..8305056 (25 bp)
TCACAGCCAAAACCTGTTCCAAGAA
LOC_Os12g14550
Target Sequence 
AAAGCGGCTGAGAGCTCGGTGCTTCAGCGTCGGAGCTCGAGGAGGGGGTAATGCCATAAGTGGCCTGCGTGTCGACGTTG
GGCAAGCAGGTTCTGGTAGCGTCGGAGCTCGGGGAGGGGATGACGGTGTAGCATGGCTGGCCGGCGACGTCGGGGCTCGA
CGCGGGCGAGAAGAGAAGGAGAAGAATCGGCCGTGGGAGAAAAGAGATGGAAGACAGGGCCTACATGTCAGCGAGGTGGG
GACAGACATTTTGGGCAATACGAAATTGAGTCTCATTCTGGTGGCTCGCTATGTTGATGGAATCATGGAACAAGGAGAAG
GAACAAGCTCACAGCCAAAACCTGTTCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis