Browse Element(s) Details


Os.51323.1.S1_at

Description gb:AK062531.1
DB_XREF= gi:32972549
TID=Os.51323.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-E04, full insert sequence.
FL= gb:AK062531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1454011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14500OsAffx.19668.1.S1_at10/1112+8275679..8279789hypothetical protein
LOC_Os12g14510OsAffx.31741.1.S1_at11/1112+8280787..8281454hypothetical protein
LOC_Os12g14520NANA12+8285550..8285942hypothetical protein
LOC_Os12g14530OsAffx.6017.1.S1_at1/1112+8293493..8296441hypothetical protein
LOC_Os12g14540Os.51323.1.S1_at11/1112+8298821..8299399expressed protein
LOC_Os12g14550OsAffx.31742.1.S1_at10/1112+8303801..8305148hypothetical protein
LOC_Os12g14550Os.27790.1.A1_at3/1112+8303801..8305148hypothetical protein
LOC_Os12g14570Os.12008.3.S1_at3/1112+8314938..8315285hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51323.1.S1_at--984--331Chr12:8298853..8298877 (25 bp)
ATAACCAAACCATCTTCGTCAGAAA
LOC_Os12g14540
Os.51323.1.S1_at--812--6191Chr12:8298911..8298935 (25 bp)
GAGGCTGTGGCCTCGCACTTCATGG
LOC_Os12g14540
Os.51323.1.S1_at--535--9311Chr12:8298943..8298967 (25 bp)
TCCCTGATCTGTACCGGCGTTGGAG
LOC_Os12g14540
Os.51323.1.S1_at--513--7231Chr12:8299120..8299144 (25 bp)
GTCGCCGGGAAATTCTCGGTGCCGA
LOC_Os12g14540
Os.51323.1.S1_at--800--5811Chr12:8299204..8299228 (25 bp)
GACCCACCACGAGTGAACTTGAGCT
LOC_Os12g14540
Os.51323.1.S1_at--1079--8891Chr12:8299223..8299247 (25 bp)
TGAGCTTGTAGCTAATACCGTTGCT
LOC_Os12g14540
Os.51323.1.S1_at--347--6711Chr12:8299267..8299291 (25 bp)
GTTCGGTAAAAATGTGTGGCGCACT
LOC_Os12g14540
Os.51323.1.S1_at--291--7551Chr12:8299282..8299306 (25 bp)
GTGGCGCACTATGAATGTCCTTATA
LOC_Os12g14540
Os.51323.1.S1_at--3--10131Chr12:8299305..8299329 (25 bp)
TATGTTCTTATATAGTACCCTCTAG
LOC_Os12g14540
Os.51323.1.S1_at--908--9951Chr12:8299320..8299344 (25 bp)
TACCCTCTAGTATATGTACCGACCA
LOC_Os12g14540
Os.51323.1.S1_at--14--4071Chr12:8299339..8299363 (25 bp)
CGACCAATTGGAAAGCTCAGCACGA
LOC_Os12g14540
Target Sequence 
ATAACCAAACCATCTTCGTCAGAAAAAGCATGGGGGAGAATGGCGTGGCCGCGCTGTGGAGGCTGTGGCCTCGCACTTCA
TGGCCCCGTCTCCCTGATCTGTACCGGCGTTGGAGGGGAGAGGGGAGAGGCCGCCACAGGGGTGTGGGAGCCGTGGTCGT
CGGCGGTCAGAGAACGAGGCAGAGCCCTGCGCGCTGTTTCCCGCTTGCGCCCGCTGGTCGGAGACCAAGGTGGAGCCCCG
CCGGCTGTCGCAGCTCTGCTCGAGTCCGTCGCCGGGAAATTCTCGGTGCCGACGCCTCGCTTCCTCTACGATAGCAAAAA
AGTGAAAAGTAAAGGAAAGAGAGAGTGGTGGGACCCACCACGAGTGAACTTGAGCTTGTAGCTAATACCGTTGCTAGCAT
AGGTGGTAAGTGAGGTTCGGTAAAAATGTGTGGCGCACTATGAATGTCCTTATATGTTCTTATATAGTACCCTCTAGTAT
ATGTACCGACCAATTGGAAAGCTCAGCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis