Browse Element(s) Details


OsAffx.197.1.S1_at

Description gb:NM_196256.1
DB_XREF= gi:37533871
TID=OsAffx.197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094J09.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g239901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23950OsAffx.29324.1.S1_at11/118+14354860..14356642hypothetical protein
LOC_Os08g23960OsAffx.29325.1.S1_at11/118+14360075..14361715F-box domain containing protein
LOC_Os08g23980OsAffx.29326.1.S1_at11/118+14377117..14377437hypothetical protein
LOC_Os08g23990OsAffx.197.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g23990OsAffx.15798.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g24000NANA8+14386180..14388018retrotransposon protein, putative, unclassified
LOC_Os08g24010NANA8+14388813..14390010retrotransposon protein, putative, unclassified
LOC_Os08g24020OsAffx.9045.1.S1_at1/118+14393569..14394430retrotransposon protein, putative, unclassified
LOC_Os08g24020OsAffx.9045.1.S1_x_at1/118+14393569..14394430retrotransposon protein, putative, unclassified
LOC_Os08g24030NANA8+14395572..14398808transposon protein, putative, unclassified
LOC_Os08g24040OsAffx.9045.1.S1_at1/118+14399438..14401396retrotransposon protein, putative, unclassified
LOC_Os08g24040OsAffx.9045.1.S1_x_at1/118+14399438..14401396retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.197.1.S1_at--539--7012Chr08:14379965..14380010 (25 bp)
GTACTCTTACACATGGAACTCGCTT
LOC_Os08g23990
OsAffx.197.1.S1_at--319--6031Chr10:12407625..12407649 (25 bp)
GAGATGAAGCTTCGCAAGCCCTTAC
NONE
OsAffx.197.1.S1_at--174--2651Chr10:12407610..12407634 (25 bp)
AAGCCCTTACCCTGATGGAACGTAT
NONE
OsAffx.197.1.S1_at--388--5871Chr10:12407528..12407552 (25 bp)
GAGCCGACTAGCACCTTTCAAGGAG
NONE
OsAffx.197.1.S1_at--234--8051Chr10:12407507..12407531 (25 bp)
GGAGAGATCCCATACTGCTTTTGAG
NONE
OsAffx.197.1.S1_at--605--1331Chr10:12407385..12407442 (25 bp)
AGAGGATCTATTCGCACATACTGCC
NONE
OsAffx.197.1.S1_at--730--2031Chr10:12407370..12407394 (25 bp)
ACATACTGCCGGTGGTGCCATATAA
NONE
OsAffx.197.1.S1_at--442--6311Chr10:12407229..12407253 (25 bp)
GATGAAATCTGACCTACCAACCACT
NONE
OsAffx.197.1.S1_at--549--9411Chr10:12407190..12407214 (25 bp)
TCGTCGACAACCTAGTCAGGCTAGT
NONE
OsAffx.197.1.S1_at--189--7711Chr10:12407163..12407187 (25 bp)
GGGTCCAAAGATCCAACCGACTGCT
NONE
OsAffx.197.1.S1_at--187--3291Chr10:12407125..12407149 (25 bp)
CAAAGCCAGCTAATCAGTCAAGTTT
NONE
Target Sequence 
GTACTCTTACACATGGAACTCGCTTCCAATGGGAGATGAAGCTTCGCAAGCCCTTACCCTGATGGAACGTATGCTGAAGT
TTAAGGAGCAAGGTTTGCAAGGGGAGAAAATCACTCGGCACTTCATCAAGAGCCGACTAGCACCTTTCAAGGAGAGATCC
CATACTGCTTTTGAGTTTGATGGCAAAAATGACCCCAACTGTGAAAATCCAGAGTCACTTGAATTCAAGATCATGAAGAA
GAGGATCTATTCGCACATACTGCCGGTGGTGCCATATAACGATTTCAACCCTCCTCCTCCGGAATTTTCTTTGATGAAAT
CTGACCTACCAACCACTCAGCGCCGCTCTCCTCGTCGACAACCTAGTCAGGCTAGTGGGGGTCCAAAGATCCAACCGACT
GCTCAACCAAACAGTCCAAAGCCAGCTAATCAGTCAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis