Browse Element(s) Details


OsAffx.29325.1.S1_at

Description tigr:9636.m02345
TID=OsAffx.29325.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2396011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23910Os.10827.1.S1_x_at11/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23910Os.46055.2.S1_x_at6/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23920Os.20602.2.S1_x_at10/118+14340109..14342289hAT family dimerisation domain containing protein
LOC_Os08g23930Os.26442.1.S1_at11/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23930Os.57545.1.S1_x_at1/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23940OsAffx.29323.1.S1_at11/118+14350614..14351523hypothetical protein
LOC_Os08g23950OsAffx.29324.1.S1_at11/118+14354860..14356642hypothetical protein
LOC_Os08g23960OsAffx.29325.1.S1_at11/118+14360075..14361715F-box domain containing protein
LOC_Os08g23980OsAffx.29326.1.S1_at11/118+14377117..14377437hypothetical protein
LOC_Os08g23990OsAffx.197.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g23990OsAffx.15798.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g24000NANA8+14386180..14388018retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29325.1.S1_at--914--5891Chr08:14360557..14360581 (25 bp)
GAGCTGCTACAAAGGTGCCCGGTGA
LOC_Os08g23960
OsAffx.29325.1.S1_at--303--6571Chr08:14360514..14360538 (25 bp)
GATTCAGCTGGTCGAAGTATCTCCA
LOC_Os08g23960
OsAffx.29325.1.S1_at--633--5331Chr08:14360501..14360525 (25 bp)
GAAGTATCTCCATGAGAGCCCGGAC
LOC_Os08g23960
OsAffx.29325.1.S1_at--583--5831Chr08:14360479..14360503 (25 bp)
GACCTGGCAGGTTATCTGGAATCCA
LOC_Os08g23960
OsAffx.29325.1.S1_at--906--4651Chr08:14360452..14360476 (25 bp)
GCGTGCAGATTTGACGAGTCCGATT
LOC_Os08g23960
OsAffx.29325.1.S1_at--791--6551Chr08:14360431..14360455 (25 bp)
GATTACTGTGATCGCTGTGCGGTTT
LOC_Os08g23960
OsAffx.29325.1.S1_at--857--5531Chr08:14360325..14360349 (25 bp)
GAAAGCTTACGTGTTCCCAAGTCGA
LOC_Os08g23960
OsAffx.29325.1.S1_at--797--5911Chr08:14360193..14360217 (25 bp)
GAGCTAGGTCATCTTCATCTAGGGA
LOC_Os08g23960
OsAffx.29325.1.S1_at--768--2691Chr08:14360163..14360187 (25 bp)
AAGCTCATCCTGCAGGTGTTGGTGC
LOC_Os08g23960
OsAffx.29325.1.S1_at--41--7411Chr08:14360148..14360172 (25 bp)
GTGTTGGTGCAGAACGTCCTACTCG
LOC_Os08g23960
OsAffx.29325.1.S1_at--1018--451Chr08:14360106..14360130 (25 bp)
ATCTGCACGAGACTCGCTACTTGTA
LOC_Os08g23960
Target Sequence 
GAGCTGCTACAAAGGTGCCCGGTGATCCGTGAGCTCTGGATAAGATTCAGCTGGTCGAAGTATCTCCATGAGAGCCCGGA
CCTGGCAGGTTATCTGGAATCCATGGCGTGCAGATTTGACGAGTCCGATTACTGTGATCGCTGTGCGGTTTCAGCTGCTG
ACAGGGGAAGACAAGAACTCAACGATAGTTGGAAGAACTCTCTGAGAAAAGTAACTGTGCAATTTCAGAAGGGAAAGCTT
ACGTGTTCCCAAGTCGAACTTGTGATGTTCTTGGTAGAAAATGCAGCTGTTCTTGAAGAGTTTGACATCGACGGAGAAAG
TCAGGATGTCACTGACCAGATAAACACCAAGATTGCCACATGGAGAGCTAGGTCATCTTCATCTAGGGAAAAGGAAGCTC
ATCCTGCAGGTGTTGGTGCAGAACGTCCTACTCGTCGGCCGCCGCCACAGCATCTGCACGAGACTCGCTACTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis