Browse Element(s) Details


OsAffx.29323.1.S1_at

Description tigr:9636.m02343
TID=OsAffx.29323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2394011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23890OsAffx.25936.1.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.7.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.2.S1_x_at3/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.5.S1_x_at1/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23900NANA8+14331826..14332278hypothetical protein
LOC_Os08g23910Os.10827.1.S1_x_at11/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23910Os.46055.2.S1_x_at6/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23920Os.20602.2.S1_x_at10/118+14340109..14342289hAT family dimerisation domain containing protein
LOC_Os08g23930Os.26442.1.S1_at11/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23930Os.57545.1.S1_x_at1/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23940OsAffx.29323.1.S1_at11/118+14350614..14351523hypothetical protein
LOC_Os08g23950OsAffx.29324.1.S1_at11/118+14354860..14356642hypothetical protein
LOC_Os08g23960OsAffx.29325.1.S1_at11/118+14360075..14361715F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29323.1.S1_at--984--2171Chr08:14351173..14351219 (25 bp)
ACAAAGTAGAACTGTCCTGGGAGTC
LOC_Os08g23940
OsAffx.29323.1.S1_at--546--9271Chr08:14351159..14351183 (25 bp)
TCCTGGGAGTCGAGCTTGACGAGCT
LOC_Os08g23940
OsAffx.29323.1.S1_at--425--4791Chr08:14351082..14351106 (25 bp)
GCTCGTGGAGGATGCCCTCGACGAA
LOC_Os08g23940
OsAffx.29323.1.S1_at--640--1851Chr08:14351062..14351086 (25 bp)
ACGAAGCACCCGTTCTTGTTGAGCA
LOC_Os08g23940
OsAffx.29323.1.S1_at--643--2731Chr08:14351026..14351050 (25 bp)
AAGCAACAGCGTGGAAGTCGCAGAA
LOC_Os08g23940
OsAffx.29323.1.S1_at--293--9371Chr08:14350936..14350960 (25 bp)
TCGACGTTGTTCACTGCCATGGCCA
LOC_Os08g23940
OsAffx.29323.1.S1_at--340--4011Chr08:14350852..14350876 (25 bp)
CGTCCGCCACGGAAGCGGTAGCATG
LOC_Os08g23940
OsAffx.29323.1.S1_at--765--3171Chr08:14350748..14350772 (25 bp)
CAATGCTCCACGTGTTCCCTGACTT
LOC_Os08g23940
OsAffx.29323.1.S1_at--486--8951Chr08:14350729..14350753 (25 bp)
TGACTTCCTTTACGTCGACTGCGAG
LOC_Os08g23940
OsAffx.29323.1.S1_at--673--10691Chr08:14350689..14350713 (25 bp)
TTGCGCGTCCTCAATGCCATCAAGG
LOC_Os08g23940
OsAffx.29323.1.S1_at--214--431Chr08:14350662..14350686 (25 bp)
ATCGAAACTCTTGGTGTTCGTCCGC
LOC_Os08g23940
Target Sequence 
ACAAAGTAGAACTGTCCTGGGAGTCGAGCTTGACGAGCTCGCCGCATGGCTCGTGGAGGATGGGAGTCGAGCTTGACGAG
CTCGCCGCATGGCTCGTGGAGGATGCCCTCGACGAAGCACCCGTTCTTGTTGAGCACCTCGACCACAAAGCAACAGCGTG
GAAGTCGCAGAAGATGTGTGCGTGGCGGTGGGACACGTTCATCCCACCACCGAGGATGCCGAGGTCGACCGTCGCCGTCG
ACGTTGTTCACTGCCATGGCCACGGCGGCGGTGCCGCTGACGCCGGGATGGTTCCCCAGCCGGAGCCAGCCATGGCGTCC
CCGTCCGCCACGGAAGCGGTAGCATGGGGAGCGGCGCCTTGGCTGCGGCGTCGATGGGAAGAAGGGGAAGGGGAAGGCCC
TTGCTCCGGCTGGCCTGCAGCACCGCAATGCTCCACGTGTTCCCTGACTTCCTTTACGTCGACTGCGAGGGTGCCTCCCA
CGACTTGCGCGTCCTCAATGCCATCAAGGAGATCGAAACTCTTGGTGTTCGTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis