Browse Element(s) Details


OsAffx.19716.1.S1_at

Description tigr:9640.m01701
TID=OsAffx.19716.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1737010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein
LOC_Os12g17380OsAffx.31774.1.S1_at11/1112+9951190..9952215hypothetical protein
LOC_Os12g17390OsAffx.31811.2.S1_x_at1/1112+9956829..9958626Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19716.1.S1_at--376--3751Chr12:9944430..9944454 (25 bp)
CTCACAGTGCCGTTCAGACGCCGAA
LOC_Os12g17370
OsAffx.19716.1.S1_at--684--9591Chr12:9944443..9944585 (25 bp)
TCAGACGCCGAACCAGATATTACTT
LOC_Os12g17370
OsAffx.19716.1.S1_at--976--5411Chr12:9944452..9944594 (25 bp)
GAACCAGATATTACTTGCCTCGCCT
LOC_Os12g17370
OsAffx.19716.1.S1_at--780--6511Chr12:9944576..9944600 (25 bp)
GATATTACTTGCCTCGCCTAAATGT
LOC_Os12g17370
OsAffx.19716.1.S1_at--1115--2051Chr12:9944582..9944606 (25 bp)
ACTTGCCTCGCCTAAATGTAGATCA
LOC_Os12g17370
OsAffx.19716.1.S1_at--632--2991Chr12:9944596..9944620 (25 bp)
AATGTAGATCAAACGCAGGATGCTC
LOC_Os12g17370
OsAffx.19716.1.S1_at--715--5011Chr12:9944610..9944634 (25 bp)
GCAGGATGCTCAACACCGCAATTGT
LOC_Os12g17370
OsAffx.19716.1.S1_at--350--9711Chr12:9944619..9944643 (25 bp)
TCAACACCGCAATTGTCCGCCGGGA
LOC_Os12g17370
OsAffx.19716.1.S1_at--895--6351NONE
GTCCGCCGGGACAGGTGCTTTCCTT
NONE
OsAffx.19716.1.S1_at--177--9751Chr12:9945749..9945773 (25 bp)
TAATTGTTCACTTCCGCGTTATATA
LOC_Os12g17370
OsAffx.19716.1.S1_at--426--2051Chr12:9945758..9945782 (25 bp)
ACTTCCGCGTTATATATCTCTAGGT
LOC_Os12g17370
Target Sequence 
CTCACAGTGCCGTTCAGACGCCGAACCAGATATTACTTGCCTCGCCTAAATGTAGATCAAACGCAGGATGCTCAACACCG
CAATTGTCCGCCGGGACAGGTGCTTTCCTTTATGCCTAATTGTTCACTTCCGCGTTATATATCTCTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis