Browse Element(s) Details


OsAffx.19729.1.S1_at

Description tigr:9640.m01822
TID=OsAffx.19729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1852011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18470NANA12+10680137..10682408retrotransposon protein, putative, unclassified
LOC_Os12g18479NANA12+10685188..10686234hypothetical protein
LOC_Os12g18490OsAffx.19728.1.S1_at11/1112+10689322..10689681hypothetical protein
LOC_Os12g18500OsAffx.8585.1.S1_at1/1112+10692896..10694936retrotransposon, putative, centromere-specific
LOC_Os12g18510OsAffx.31798.1.S1_at11/1112+10698358..10701432hypothetical protein
LOC_Os12g18510OsAffx.4864.1.S1_at1/1112+10698358..10701432hypothetical protein
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19729.1.S1_at--320--9951Chr12:10707416..10707440 (25 bp)
TACGCGCAGCTGTTCCTGCCGCGGA
LOC_Os12g18520
OsAffx.19729.1.S1_at--154--4571Chr12:10707448..10707472 (25 bp)
GCGCGTCTACGACAATATCTTCGAC
LOC_Os12g18520
OsAffx.19729.1.S1_at--735--9931Chr12:10707455..10707479 (25 bp)
TACGACAATATCTTCGACGCCGGGA
LOC_Os12g18520
OsAffx.19729.1.S1_at--670--2231Chr12:10707459..10707483 (25 bp)
ACAATATCTTCGACGCCGGGACGTG
LOC_Os12g18520
OsAffx.19729.1.S1_at--646--1911Chr12:10707479..10707503 (25 bp)
ACGTGGGGCGGCTTCTTCATCATCT
LOC_Os12g18520
OsAffx.19729.1.S1_at--126--9071Chr12:10707503..10707527 (25 bp)
TGCATCATGGTCTGCGTCGTCCTGG
LOC_Os12g18520
OsAffx.19729.1.S1_at--546--9491Chr12:10707513..10707537 (25 bp)
TCTGCGTCGTCCTGGGCCTCAGGGT
LOC_Os12g18520
OsAffx.19729.1.S1_at--188--10851Chr12:10707554..10707578 (25 bp)
TTGGTGGCATGCACCTGCGTCGTCG
LOC_Os12g18520
OsAffx.19729.1.S1_at--618--7531Chr12:10707557..10707581 (25 bp)
GTGGCATGCACCTGCGTCGTCGCTG
LOC_Os12g18520
OsAffx.19729.1.S1_at--329--7691Chr12:10707594..10707618 (25 bp)
GGGTCGTCGTGGTCTGGGTGTGGCT
LOC_Os12g18520
OsAffx.19729.1.S1_at--1097--3891Chr12:10707607..10707631 (25 bp)
CTGGGTGTGGCTTGCTCGCACGTAC
LOC_Os12g18520
Target Sequence 
TACGCGCAGCTGTTCCTGCCGCGGACGCCGGTGCGCGTCTACGACAATATCTTCGACGCCGGGACGTGGGGCGGCTTCTT
CATCATCTGCATCATGGTCTGCGTCGTCCTGGGCCTCAGGGTGGACGACGCGCGCGTCTTGGTGGCATGCACCTGCGTCG
TCGCTGCCTTCGTCGTTGGGGTCGTCGTGGTCTGGGTGTGGCTTGCTCGCACGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis