Browse Element(s) Details


OsAffx.19840.1.S1_at

Description tigr:9640.m02558
TID=OsAffx.19840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2667011/11hypothetical protein
LOC_Os04g264001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26640OsAffx.29695.1.S1_s_at1/1112+15603163..15606730retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.46012.2.S1_x_at9/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.27088.1.A1_x_at6/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.46012.3.S1_x_at5/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.54691.1.S1_x_at1/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26660OsAffx.31174.4.S1_x_at11/1112+15624434..15626162hypothetical protein
LOC_Os12g26660OsAffx.31174.5.S1_x_at8/1112+15624434..15626162hypothetical protein
LOC_Os12g26670OsAffx.19840.1.S1_at11/1112+15628902..15629362hypothetical protein
LOC_Os12g26680OsAffx.31895.1.S1_at11/1112+15634168..15635277hypothetical protein
LOC_Os12g26690Os.51010.1.S1_at11/1112+15636766..15637739expressed protein
LOC_Os12g26700NANA12+15643190..15644320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710OsAffx.31813.1.S1_x_at2/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710Os.51869.1.S1_at1/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19840.1.S1_at--1161--2712Chr12:15629006..15629030 (25 bp)
AAGAAATTTCAGGTCAATAGGTTCA
LOC_Os12g26670
OsAffx.19840.1.S1_at--950--7071Chr12:15628994..15629018 (25 bp)
GTCAATAGGTTCAGGCCATTCATAA
LOC_Os12g26670
OsAffx.19840.1.S1_at--89--291Chr12:15628990..15629014 (25 bp)
ATAGGTTCAGGCCATTCATAACAGA
LOC_Os12g26670
OsAffx.19840.1.S1_at--675--7891Chr12:15628987..15629011 (25 bp)
GGTTCAGGCCATTCATAACAGAATC
LOC_Os12g26670
OsAffx.19840.1.S1_at--1024--871Chr12:15628982..15629006 (25 bp)
AGGCCATTCATAACAGAATCAGTAT
LOC_Os12g26670
OsAffx.19840.1.S1_at--10--2151Chr12:15628970..15628994 (25 bp)
ACAGAATCAGTATACATGATATCAA
LOC_Os12g26670
OsAffx.19840.1.S1_at--182--6512Chr12:15628953..15628977 (25 bp)
GATATCAAATTTCAAGGTTTCTACT
LOC_Os12g26670
OsAffx.19840.1.S1_at--374--3272Chr12:15628948..15628972 (25 bp)
CAAATTTCAAGGTTTCTACTGTAGC
LOC_Os12g26670
OsAffx.19840.1.S1_at--169--3111Chr12:15628946..15628970 (25 bp)
AATTTCAAGGTTTCTACTGTAGCAA
LOC_Os12g26670
OsAffx.19840.1.S1_at--817--10571Chr12:15628935..15628959 (25 bp)
TTCTACTGTAGCAAAATATCGTCCA
LOC_Os12g26670
OsAffx.19840.1.S1_at--1135--9911Chr12:15628932..15628956 (25 bp)
TACTGTAGCAAAATATCGTCCAGTT
LOC_Os12g26670
Target Sequence 
AAGAAATTTCAGGTCAATAGGTTCAGGCCATTCATAACAGAATCAGTATACATGATATCAAATTTCAAGGTTTCTACTGT
AGCAAAATATCGTCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis