Browse Element(s) Details


OsAffx.31895.1.S1_at

Description tigr:9640.m02559
TID=OsAffx.31895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2668011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26650Os.46012.2.S1_x_at9/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.27088.1.A1_x_at6/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.46012.3.S1_x_at5/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26650Os.54691.1.S1_x_at1/1112+15608885..15611533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g26660OsAffx.31174.4.S1_x_at11/1112+15624434..15626162hypothetical protein
LOC_Os12g26660OsAffx.31174.5.S1_x_at8/1112+15624434..15626162hypothetical protein
LOC_Os12g26670OsAffx.19840.1.S1_at11/1112+15628902..15629362hypothetical protein
LOC_Os12g26680OsAffx.31895.1.S1_at11/1112+15634168..15635277hypothetical protein
LOC_Os12g26690Os.51010.1.S1_at11/1112+15636766..15637739expressed protein
LOC_Os12g26700NANA12+15643190..15644320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710OsAffx.31813.1.S1_x_at2/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710Os.51869.1.S1_at1/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26720OsAffx.31896.1.S1_at10/1112+15659351..15659994hypothetical protein
LOC_Os12g26720OsAffx.31248.2.S1_x_at1/1112+15659351..15659994hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31895.1.S1_at--892--7779Chr12:9926056..9926080 (25 bp)
GGTGCTGTGTTCGAGCCCAGATGAA
NONE
OsAffx.31895.1.S1_at--332--7319Chr12:9926057..9926081 (25 bp)
GTGCTGTGTTCGAGCCCAGATGAAA
NONE
OsAffx.31895.1.S1_at--542--9139Chr12:9926058..9926082 (25 bp)
TGCTGTGTTCGAGCCCAGATGAAAG
NONE
OsAffx.31895.1.S1_at--1109--7418Chr12:9926062..9926086 (25 bp)
GTGTTCGAGCCCAGATGAAAGCATT
NONE
OsAffx.31895.1.S1_at--323--67110Chr12:9926064..9926088 (25 bp)
GTTCGAGCCCAGATGAAAGCATTAA
NONE
OsAffx.31895.1.S1_at--1116--5878Chr12:9926068..9926092 (25 bp)
GAGCCCAGATGAAAGCATTAATATC
NONE
OsAffx.31895.1.S1_at--4--7631Chr12:15634305..15634329 (25 bp)
GGGAGCAGGCGGTGTATCCACGGCC
LOC_Os12g26680
OsAffx.31895.1.S1_at--242--911Chr12:15634299..15634323 (25 bp)
AGGCGGTGTATCCACGGCCGAGAGG
LOC_Os12g26680
OsAffx.31895.1.S1_at--262--7611Chr12:15634247..15634271 (25 bp)
GGGAAGGGCGCGAGCTGCAGGAAGC
LOC_Os12g26680
OsAffx.31895.1.S1_at--323--3451Chr12:15634230..15634254 (25 bp)
CAGGAAGCGACTGTGACGGTGGAGT
LOC_Os12g26680
OsAffx.31895.1.S1_at--286--5751Chr12:15634204..15634228 (25 bp)
GACGGATCCGGTAGCGGGAGACGAA
LOC_Os12g26680
Target Sequence 
GGTGCTGTGTTCGAGCCCAGATGAAAGCATTAATATCAAATATATTAAGATTGGGTGGGGGCGGATCTGTGGGCGGAAGA
GGTGCGCGCGGCGATGGTGACGGTGGATGGGATGAATCCGGCGGTGGGAAGGGGAGCAGGCGGTGTATCCACGGCCGAGA
GGGGCATGGGCCAGAGGGGCGCAAGCGGGGGGAAGGGCGCGAGCTGCAGGAAGCGACTGTGACGGTGGAGTGGACGGATC
CGGTAGCGGGAGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis