Browse Element(s) Details


OsAffx.31896.1.S1_at

Description tigr:9640.m02564
TID=OsAffx.31896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2672010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26680OsAffx.31895.1.S1_at11/1112+15634168..15635277hypothetical protein
LOC_Os12g26690Os.51010.1.S1_at11/1112+15636766..15637739expressed protein
LOC_Os12g26700NANA12+15643190..15644320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710OsAffx.31813.1.S1_x_at2/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26710Os.51869.1.S1_at1/1112+15645997..15652772retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26720OsAffx.31896.1.S1_at10/1112+15659351..15659994hypothetical protein
LOC_Os12g26720OsAffx.31248.2.S1_x_at1/1112+15659351..15659994hypothetical protein
LOC_Os12g26729NANA12+15661130..15661475NA
LOC_Os12g26740NANA12+15667135..15670049retrotransposon protein, putative, unclassified
LOC_Os12g26750NANA12+15671294..15673456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26760NANA12+15677215..15680445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26770NANA12+15682373..15684617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26780NANA12+15684903..15688613retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31896.1.S1_at--1103--5271Chr12:15659809..15659833 (25 bp)
GAATGGCGCCGCGAACAACCTCGGG
LOC_Os12g26720
OsAffx.31896.1.S1_at--737--871Chr12:15659807..15659831 (25 bp)
ATGGCGCCGCGAACAACCTCGGGCA
LOC_Os12g26720
OsAffx.31896.1.S1_at--416--1131Chr12:15659701..15659799 (25 bp)
AGTCCACACCATCTTCGTCGACTAG
LOC_Os12g26720
OsAffx.31896.1.S1_at--293--2171Chr12:15659696..15659794 (25 bp)
ACACCATCTTCGTCGACTAGACGGC
LOC_Os12g26720
OsAffx.31896.1.S1_at--166--431NONE
ATCTTCGTCGACTAGACGGCCACGT
NONE
OsAffx.31896.1.S1_at--660--10611Chr12:15659688..15659712 (25 bp)
TTCGTCGACTAGACGGCCACGTCCT
LOC_Os12g26720
OsAffx.31896.1.S1_at--820--9411Chr12:15659523..15659547 (25 bp)
TCGTCGCAACGAGCGGCTGCAGAAA
LOC_Os12g26720
OsAffx.31896.1.S1_at--1147--1851Chr12:15659515..15659539 (25 bp)
ACGAGCGGCTGCAGAAAGCTGTTCA
LOC_Os12g26720
OsAffx.31896.1.S1_at--284--531Chr12:15659425..15659449 (25 bp)
ATCGACGCACGGTTCCTGGTGTCTG
LOC_Os12g26720
OsAffx.31896.1.S1_at--33--1931Chr12:15659417..15659441 (25 bp)
ACGGTTCCTGGTGTCTGTGCTGCTC
LOC_Os12g26720
OsAffx.31896.1.S1_at--484--4011Chr12:15659382..15659406 (25 bp)
CGTCCTGGCGGTGCCAGAAGCATAT
LOC_Os12g26720
Target Sequence 
GAATGGCGCCGCGAACAACCTCGGGCACCTCCACAGTCCACACCATCTTCGTCGACTAGACGGCCACGTCCTCGCCGCGC
CGGGCACCGACAAGGCCACCAGCCACGGCAAGACACGCAGGGACGTTGGCGACGCCATCCCGCGCCACATCTGGATGCTC
GAGGCCAAGGCCGTCTCCGAGAGGGACGCCGCGGCGAGGGCGCTCGCCGCGCTCGTCGCAACGAGCGGCTGCAGAAAGCT
GTTCAAGAAAAAGGAGCAAGGCATCGTCAATGTCGTCCAGCTGCTCGACCCGAGCACCGTCCGCGGCGGCATCGACGCAC
GGTTCCTGGTGTCTGTGCTGCTCGCCGTCTCGCCGTCCTGGCGGTGCCAGAAGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis