Browse Element(s) Details


OsAffx.19841.1.S1_at

Description tigr:9640.m02581
TID=OsAffx.19841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2688010/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26850NANA12+15726229..15731668hypothetical protein
LOC_Os12g26860Os.45173.5.S1_x_at4/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.2.A1_x_at2/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.45173.1.S1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.3.A1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26870Os.45173.5.S1_x_at4/1112+15746214..15748981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26880OsAffx.19841.1.S1_at10/1112+15755972..15757777Plastocyanin-like domain containing protein, expressed
LOC_Os12g26890OsAffx.19842.1.S1_at11/1112+15760792..15761951hypothetical protein
LOC_Os12g26890OsAffx.18924.2.S1_x_at6/1112+15760792..15761951hypothetical protein
LOC_Os12g26900NANA12+15763121..15764797retrotransposon protein, putative, unclassified
LOC_Os12g26910NANA12+15766239..15766841hypothetical protein
LOC_Os12g26920NANA12+15767690..15769491retrotransposon protein, putative, LINE subclass
LOC_Os12g26930OsAffx.31898.1.S1_at11/1112+15769967..15770413hypothetical protein
LOC_Os12g26940Os.12675.1.S1_at11/1112+15773759..15777216CHASE domain containing protein, expressed
LOC_Os12g26950NANA12+15778274..15780607transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19841.1.S1_at--290--9851Chr12:15756100..15756124 (25 bp)
TACAAGAACCACACGGTGGCCGGCG
LOC_Os12g26880
OsAffx.19841.1.S1_at--468--4511Chr12:15756124..15756148 (25 bp)
GCCGACGGGTGGTTCTTCAACGCGA
LOC_Os12g26880
OsAffx.19841.1.S1_at--905--7731Chr12:15756131..15756155 (25 bp)
GGTGGTTCTTCAACGCGACGAGCAA
LOC_Os12g26880
OsAffx.19841.1.S1_at--204--10571Chr12:15756136..15756160 (25 bp)
TTCTTCAACGCGACGAGCAACACCA
LOC_Os12g26880
OsAffx.19841.1.S1_at--924--4611Chr12:15756191..15756215 (25 bp)
GCGAGACCTTCTATCTCGGCGACTA
LOC_Os12g26880
OsAffx.19841.1.S1_at--581--9971NONE
TACCTCATCTTCAAGACGGACGACA
NONE
OsAffx.19841.1.S1_at--734--431Chr12:15757221..15757244 (24 bp)
ATCTTCAAGACGGACGACAGCTCGT
LOC_Os12g26880
OsAffx.19841.1.S1_at--564--5791Chr12:15757232..15757256 (25 bp)
GACGACAGCTCGTCGGTGGTTCAGA
LOC_Os12g26880
OsAffx.19841.1.S1_at--417--9431Chr12:15757244..15757268 (25 bp)
TCGGTGGTTCAGACGTCGAACGCCA
LOC_Os12g26880
OsAffx.19841.1.S1_at--1094--1071Chr12:15757293..15757317 (25 bp)
AGGGCCCGGAGACCCTCATCTACAG
LOC_Os12g26880
OsAffx.19841.1.S1_at--804--7891Chr12:15757446..15757470 (25 bp)
GGTTCGAGATCAAGGTCGCCCACGG
LOC_Os12g26880
Target Sequence 
TACAAGAACCACACGGTGGCCGGCGCCGACGGGTGGTTCTTCAACGCGACGAGCAACACCACCTCCGGCAACTACTCCGA
CTGGGCCGCCGGCGAGACCTTCTATCTCGGCGACTACCTCATCTTCAAGACGGACGACAGCTCGTCGGTGGTTCAGACGT
CGAACGCCACCGCCTACTCGCTCTGCGACGCCGAGGGCCCGGAGACCCTCATCTACAGCCCCGGCCACGGCGACGCGGCG
TCGGCGTCCCCGCGCGCCGCCACCATCGCCGTCCCGCTCACCGTCGAGGGCGCCAACTACTTCTTCTCCGAAGCCGGCGA
CGGCGCGCAGTGCGAGGAAGGGATGCGGTTCGAGATCAAGGTCGCCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis