Browse Element(s) Details


OsAffx.19858.2.S1_at

Description tigr:9640.m02669
TID=OsAffx.19858.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2776011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27720OsAffx.7719.1.S1_at11/1112+16345879..16346346hypothetical protein
LOC_Os12g27730OsAffx.19542.3.S1_x_at3/1112+16349666..16353605retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g27740OsAffx.7720.1.S1_at11/1112+16357983..16358513hypothetical protein
LOC_Os12g27750OsAffx.31905.1.S1_at11/1112+16361924..16363303F-box domain containing protein
LOC_Os12g27760OsAffx.19858.2.S1_at11/1112+16365231..16366466F-box domain containing protein
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27780OsAffx.92.1.S1_at9/1112+16373383..16377656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27790OsAffx.19858.1.S1_x_at11/1112+16379526..16381318F-box domain containing protein
LOC_Os12g27800Os.46500.1.S1_at1/1112+16384096..16386750transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27810Os.56315.1.S1_at11/1112+16388718..16390264F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19858.2.S1_at--376--6131Chr12:16365900..16365924 (25 bp)
GAGGTGCAGGAGTTAACCCCGGACA
LOC_Os12g27760
OsAffx.19858.2.S1_at--1125--7251Chr12:16365903..16365927 (25 bp)
GTGCAGGAGTTAACCCCGGACACTG
LOC_Os12g27760
OsAffx.19858.2.S1_at--816--6051Chr12:16365909..16365933 (25 bp)
GAGTTAACCCCGGACACTGGCACGT
LOC_Os12g27760
OsAffx.19858.2.S1_at--983--1391Chr12:16366066..16366090 (25 bp)
AGACATACCAACTCCTCCTTCGGAT
LOC_Os12g27760
OsAffx.19858.2.S1_at--649--9231Chr12:16366081..16366105 (25 bp)
TCCTTCGGATGTCCCTGGACCGGGA
LOC_Os12g27760
OsAffx.19858.2.S1_at--40--1251Chr12:16366107..16366131 (25 bp)
AGCTTGGGCCGGCAATACCACCACT
LOC_Os12g27760
OsAffx.19858.2.S1_at--513--5771Chr12:16366214..16366238 (25 bp)
GACGATCATGCTGTTGCCTACCGAA
LOC_Os12g27760
OsAffx.19858.2.S1_at--1078--611Chr12:16366221..16366245 (25 bp)
ATGCTGTTGCCTACCGAACTCCGTG
LOC_Os12g27760
OsAffx.19858.2.S1_at--546--9391Chr12:16366348..16366372 (25 bp)
TCGTCGGCCGGAGAACCCACGTGGA
LOC_Os12g27760
OsAffx.19858.2.S1_at--1131--5431Chr12:16366360..16366384 (25 bp)
GAACCCACGTGGAGATCTGGACGAT
LOC_Os12g27760
OsAffx.19858.2.S1_at--945--6371Chr12:16366391..16366415 (25 bp)
GATCCGCCGTGGGATGGCCTTGCTC
LOC_Os12g27760
Target Sequence 
GAGGTGCAGGAGTTAACCCCGGACACTGGCACGTGGGGCCCAGTCACCACGCTCCCCGTCGTCGATGCCGATCACTACCT
CCACCCGCACCCCGTGCTGGTCCGCCCACCCGTCGTCATCGCCGGCGTCGCCTACTTCCTCGGCGAGATGTCCGGGAGAG
ACGACCAGACATACCAACTCCTCCTTCGGATGTCCCTGGACCGGGAGAGCTTGGGCCGGCAATACCACCACTCGCCGCCG
TCCTACAGCTACTTCATCCTCGCCGTCGACGTCTCCATCCGACGCGACGGCGAGACCGGAACAACAGCGGCGGCGACGAT
CATGCTGTTGCCTACCGAACTCCGTGCCCCGTCGTACACCGGCGAGGCAACCGTCACGCCGACGGCGGGGCAGCTCCTGC
TTTCGCCGTCGTCGTGCGGCGGCGGCAGAAGGTCGTCGTTGGCGCTGCTCGTCGGCCGGAGAACCCACGTGGAGATCTGG
ACGATGAAGCTGATCCGCCGTGGGATGGCCTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19858.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis