Browse Element(s) Details


Os.56315.1.S1_at

Description gb:AK109841.1
DB_XREF= gi:32995050
TID=Os.56315.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-E01, full insert sequence.
FL= gb:AK109841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2781011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27760OsAffx.19858.2.S1_at11/1112+16365231..16366466F-box domain containing protein
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27780OsAffx.92.1.S1_at9/1112+16373383..16377656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27790OsAffx.19858.1.S1_x_at11/1112+16379526..16381318F-box domain containing protein
LOC_Os12g27800Os.46500.1.S1_at1/1112+16384096..16386750transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27810Os.56315.1.S1_at11/1112+16388718..16390264F-box domain containing protein, expressed
LOC_Os12g27820OsAffx.19859.1.S1_at11/1112+16391531..16391839hypothetical protein
LOC_Os12g27830Os.38999.1.S1_at11/1112+16395541..16398065oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g27840NANA12+16403619..16403921hypothetical protein
LOC_Os12g27850OsAffx.31907.1.S1_at10/1112+16409988..16410903hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56315.1.S1_at--599--5471Chr12:16389685..16389709 (25 bp)
GAACTCCGGCTGCTATCGTCGTGCA
LOC_Os12g27810
Os.56315.1.S1_at--88--7171Chr12:16389878..16389902 (25 bp)
GTCTCTTGTCGGTGTCGTGCACGAG
LOC_Os12g27810
Os.56315.1.S1_at--377--9491Chr12:16390037..16390061 (25 bp)
TCTGCTTGCTGGACCGGCGGACGAT
LOC_Os12g27810
Os.56315.1.S1_at--145--6191Chr12:16390081..16390105 (25 bp)
GAGGACTTCAGCGAGTTCCGTGATG
LOC_Os12g27810
Os.56315.1.S1_at--1053--7371Chr12:16390100..16390124 (25 bp)
GTGATGGGCCTAACGGTGTGTTCCT
LOC_Os12g27810
Os.56315.1.S1_at--1122--6691Chr12:16390119..16390143 (25 bp)
GTTCCTGCCGTACGAGATTGGTGTT
LOC_Os12g27810
Os.56315.1.S1_at--996--6591Chr12:16390134..16390158 (25 bp)
GATTGGTGTTTCCAGTTGGGTTCCT
LOC_Os12g27810
Os.56315.1.S1_at--764--6691Chr12:16390153..16390177 (25 bp)
GTTCCTTCGATATCTCCATGATTTT
LOC_Os12g27810
Os.56315.1.S1_at--766--7931Chr12:16390190..16390214 (25 bp)
GGATTACCGGAAGTCGCAACTCGCA
LOC_Os12g27810
Os.56315.1.S1_at--483--5151Chr12:16390205..16390229 (25 bp)
GCAACTCGCAAGCAACACCAAATTA
LOC_Os12g27810
Os.56315.1.S1_at--996--9811Chr12:16390228..16390252 (25 bp)
TAACATGCGTGTGCTCAATTATACT
LOC_Os12g27810
Target Sequence 
GAACTCCGGCTGCTATCGTCGTGCACGGGCGAGGCAGACGTCTCGCCGGGGCAGCTCCTGCTGGTGCCGCCGTCGTCGTG
CGGCGGCGGCGACAGGAAGTCGTTGGCGCTGCTCGTCGGCCGGAGGACGCAGGTGGAGATCTGGGCGATGAACTTCGGCG
GCGGCTGCGGCGCCAGCGCCAGGTCGGCCCCGCGTCTCTTGTCGGTGTCGTGCACGAGGGTCGTCGACTTGACGACGACG
GGAGTGCACCGGAGTCCATGCTCCCCGCCGCTGCCGGTGCCGGAGTCGGACGAGGTGTTCGTGTGGTCCGGCGAGGCGAG
CGGCGCCGTGGTGCTCCGGCTCAGGGGGACGCTCTGCTTGCTGGACCGGCGGACGATGGCGGTCCGTGCGCTCGGCGAGG
ACTTCAGCGAGTTCCGTGATGGGCCTAACGGTGTGTTCCTGCCGTACGAGATTGGTGTTTCCAGTTGGGTTCCTTCGATA
TCTCCATGATTTTGTGAGAAACGTGGGATTACCGGAAGTCGCAACTCGCAAGCAACACCAAATTAACATGCGTGTGCTCA
ATTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis