Browse Element(s) Details


Os.38999.1.S1_at

Description gb:AK121922.1
DB_XREF= gi:37991545
TID=Os.38999.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033106F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033106F11, full insert sequence.
FL= gb:AK121922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2783011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27780OsAffx.92.1.S1_at9/1112+16373383..16377656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27790OsAffx.19858.1.S1_x_at11/1112+16379526..16381318F-box domain containing protein
LOC_Os12g27800Os.46500.1.S1_at1/1112+16384096..16386750transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27810Os.56315.1.S1_at11/1112+16388718..16390264F-box domain containing protein, expressed
LOC_Os12g27820OsAffx.19859.1.S1_at11/1112+16391531..16391839hypothetical protein
LOC_Os12g27830Os.38999.1.S1_at11/1112+16395541..16398065oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g27840NANA12+16403619..16403921hypothetical protein
LOC_Os12g27850OsAffx.31907.1.S1_at10/1112+16409988..16410903hypothetical protein
LOC_Os12g27860OsAffx.19860.1.S1_at10/1112+16420188..16422064hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38999.1.S1_at--1034--2471Chr12:16397016..16397040 (25 bp)
AACACCTGGGTGGATCGAGTCTGAG
LOC_Os12g27830
Os.38999.1.S1_at--571--10351Chr12:16397570..16397594 (25 bp)
TTTATTTCCCGTGGAGTACGCGAAG
LOC_Os12g27830
Os.38999.1.S1_at--78--5191Chr12:16397627..16397651 (25 bp)
GCAAGGGAAGCGTTGTCTCACCGTG
LOC_Os12g27830
Os.38999.1.S1_at--149--9211Chr12:16397650..16397674 (25 bp)
TGCCACCATGGTTCAGCACAATGTA
LOC_Os12g27830
Os.38999.1.S1_at--683--1771Chr12:16397674..16397698 (25 bp)
ACCTGTGGAGGGTATTCGCACCGGA
LOC_Os12g27830
Os.38999.1.S1_at--113--8031Chr12:16397696..16397720 (25 bp)
GGAGGTCGTCGAGTTCTGCTACCGC
LOC_Os12g27830
Os.38999.1.S1_at--58--1811Chr12:16397734..16397758 (25 bp)
ACCGCCATGGTGGTAGCCAAGCTGA
LOC_Os12g27830
Os.38999.1.S1_at--751--2731Chr12:16397793..16397817 (25 bp)
AAGAAGCTCTTGTATCCAACGTCGC
LOC_Os12g27830
Os.38999.1.S1_at--516--5271Chr12:16397845..16397869 (25 bp)
GAATGCCCAGTTCTTCTGAGCATGA
LOC_Os12g27830
Os.38999.1.S1_at--179--5371Chr12:16397888..16397912 (25 bp)
GAAGAACTCTGCAGGTCTGAACCTT
LOC_Os12g27830
Os.38999.1.S1_at--156--3111Chr12:16398016..16398040 (25 bp)
AATAGTGCTGTGTTCTTAACTGGTA
LOC_Os12g27830
Target Sequence 
AACACCTGGGTGGATCGAGTCTGAGATGTCAAAAGGGAAATTTCTCAAGGATCATGGTGAAATGGAGGTCGATCAAGAAA
TGCGAGATGCTCAAATTGGTTTATTTCCCGTGGAGTACGCGAAGAATTGCGCAAAAGCCATGGTACAAGCGGTTCGGCAA
GGGAAGCGTTGTCTCACCGTGCCACCATGGTTCAGCACAATGTACCTGTGGAGGGTATTCGCACCGGAGGTCGTCGAGTT
CTGCTACCGCCTCCTGTACATGCACCGCCATGGTGGTAGCCAAGCTGATGCGCCGAGCAAGAAGATGGCTGAGGCTGGTG
GAAAGAAGCTCTTGTATCCAACGTCGCTGCGCTCTGATGACATCAAGGATGAGTGAATGCCCAGTTCTTCTGAGCATGAA
CTTCAGTATATTCCTCTGAAGAACTCTGCAGGTCTGAACCTTCCATGAAATGGGCCAAATAGATAAAATCTTAGTATGAA
CTGTGGCTATGATCATGGAAAAATATGTATGTGCTACTATTCTGTGTATGAATAAGTTGTGTTCTAATAGTGCTGTGTTC
TTAACTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38999.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis