Browse Element(s) Details


OsAffx.31907.1.S1_at

Description tigr:9640.m02678
TID=OsAffx.31907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2785010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27800Os.46500.1.S1_at1/1112+16384096..16386750transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27810Os.56315.1.S1_at11/1112+16388718..16390264F-box domain containing protein, expressed
LOC_Os12g27820OsAffx.19859.1.S1_at11/1112+16391531..16391839hypothetical protein
LOC_Os12g27830Os.38999.1.S1_at11/1112+16395541..16398065oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g27840NANA12+16403619..16403921hypothetical protein
LOC_Os12g27850OsAffx.31907.1.S1_at10/1112+16409988..16410903hypothetical protein
LOC_Os12g27860OsAffx.19860.1.S1_at10/1112+16420188..16422064hypothetical protein
LOC_Os12g27870OsAffx.22848.3.S1_x_at4/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27870OsAffx.22848.4.S1_x_at3/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27870OsAffx.22848.4.S1_at2/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27880OsAffx.22947.1.S1_x_at1/1112+16435410..16439255retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31907.1.S1_at--776--10331Chr12:16410024..16410048 (25 bp)
TTTACAATCCTTATGCTCCTCATGG
LOC_Os12g27850
OsAffx.31907.1.S1_at--513--3811NONE
CTCCTCATGGCCGTACAAGGTTATA
NONE
OsAffx.31907.1.S1_at--842--9791Chr12:16410546..16410570 (25 bp)
TAAGCCGGTCATGATGTCAATCGCC
LOC_Os12g27850
OsAffx.31907.1.S1_at--743--751Chr12:16410559..16410583 (25 bp)
ATGTCAATCGCCGTACGTCGTATAG
LOC_Os12g27850
OsAffx.31907.1.S1_at--516--5931Chr12:16410612..16410636 (25 bp)
GAGCATCGACATCCAGCAGACTAAC
LOC_Os12g27850
OsAffx.31907.1.S1_at--227--4571Chr12:16410655..16410679 (25 bp)
GCGCTCGACACGATGTTCCAAGTGT
LOC_Os12g27850
OsAffx.31907.1.S1_at--747--7451Chr12:16410676..16410700 (25 bp)
GTGTCGGTGACTAACAGGTGCACGT
LOC_Os12g27850
OsAffx.31907.1.S1_at--239--9031Chr12:16410694..16410718 (25 bp)
TGCACGTGCACGGTGAGGACCGTCT
LOC_Os12g27850
OsAffx.31907.1.S1_at--807--9631Chr12:16410722..16410746 (25 bp)
TCAGGGCCGACGGTTTCACGAGCGC
LOC_Os12g27850
OsAffx.31907.1.S1_at--835--4071Chr12:16410821..16410845 (25 bp)
CGAGCGCCAAATCGGTCACGTTTCA
LOC_Os12g27850
OsAffx.31907.1.S1_at--392--6831Chr12:16410840..16410864 (25 bp)
GTTTCAATACGCTTGGGACCACTAC
LOC_Os12g27850
Target Sequence 
TTTACAATCCTTATGCTCCTCATGGCCGTACAAGGTTATAAGCCGGTCATGATGTCAATCGCCGTACGTCGTATAGGGGC
CGAGTCCCAGCGGTGCACCCCATCGAGCATCGACATCCAGCAGACTAACACCGGGAAGAAGGTCGGCGCGCTCGACACGA
TGTTCCAAGTGTCGGTGACTAACAGGTGCACGTGCACGGTGAGGACCGTCTTCCTCAGGGCCGACGGTTTCACGAGCGCG
GTGGCCGTTGACCCCAAGCTGTTCCGACAGGCGGGGTCTGCCGGCTACCTCGTCGGCGATGGCCGGCGCATCCCGAGCGC
CAAATCGGTCACGTTTCAATACGCTTGGGACCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis