Browse Element(s) Details


OsAffx.19860.1.S1_at

Description tigr:9640.m02679
TID=OsAffx.19860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2786010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27830Os.38999.1.S1_at11/1112+16395541..16398065oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g27840NANA12+16403619..16403921hypothetical protein
LOC_Os12g27850OsAffx.31907.1.S1_at10/1112+16409988..16410903hypothetical protein
LOC_Os12g27860OsAffx.19860.1.S1_at10/1112+16420188..16422064hypothetical protein
LOC_Os12g27870OsAffx.22848.3.S1_x_at4/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27870OsAffx.22848.4.S1_x_at3/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27870OsAffx.22848.4.S1_at2/1112+16427411..16432089retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27880OsAffx.22947.1.S1_x_at1/1112+16435410..16439255retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27890NANA12+16439540..16441554retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g27900NANA12+16443671..16444525retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19860.1.S1_at--775--7551Chr12:16420269..16420293 (25 bp)
GTGGCCAGCTGTGAAGACAATAGCT
LOC_Os12g27860
OsAffx.19860.1.S1_at--170--7351Chr12:16420279..16420303 (25 bp)
GTGAAGACAATAGCTCCAGTTGGTG
LOC_Os12g27860
OsAffx.19860.1.S1_at--465--1411Chr12:16420283..16420307 (25 bp)
AGACAATAGCTCCAGTTGGTGTCAT
LOC_Os12g27860
OsAffx.19860.1.S1_at--578--9171Chr12:16420410..16420434 (25 bp)
TCGGTAAAGACGTTAACGCCTATCA
LOC_Os12g27860
OsAffx.19860.1.S1_at--226--6771Chr12:16420421..16420445 (25 bp)
GTTAACGCCTATCAACGGCGGCATA
LOC_Os12g27860
OsAffx.19860.1.S1_at--596--1931Chr01:13094685..13094747 (25 bp)
ACGGCGGCATAATAGCCGAGGTGGC
NONE
OsAffx.19860.1.S1_at--1112--10011Chr12:16421947..16421971 (25 bp)
TAGAAGCAGCTTGAGTCGACTAAGG
LOC_Os12g27860
OsAffx.19860.1.S1_at--132--5071Chr12:16421952..16421976 (25 bp)
GCAGCTTGAGTCGACTAAGGATGAA
LOC_Os12g27860
OsAffx.19860.1.S1_at--1045--45316Chr12:16421986..16422010 (25 bp)
GCCCATGAACAGTGGCATAATAGGC
LOC_Os12g27860
OsAffx.19860.1.S1_at--197--3111Chr12:16422004..16422028 (25 bp)
AATAGGCCAGCTGTCTAGGCAGAAA
LOC_Os12g27860
OsAffx.19860.1.S1_at--721--4411Chr12:16422009..16422033 (25 bp)
GCCAGCTGTCTAGGCAGAAACACCA
LOC_Os12g27860
Target Sequence 
GTGGCCAGCTGTGAAGACAATAGCTCCAGTTGGTGTCATACGAGGCGGCCGGTCGGTGAAGATGTAGATGCCCAACAACG
ACGGCATGATAGGCCAGCCGTGCAAGCGGAGACACCAGTCGGCGGCAGACGAGGCGGCCGGTCGGTAAAGACGTTAACGC
CTATCAACGGCGGCATAATAGCCGAGGTGGCCGATGTGGGAACAAAGTCGTCCATCAATGGCAATGAAAACATCAGCCAT
AGAAGCAGCTTGAGTCGACTAAGGATGAAAGTGAAGACGCCCATGAACAGTGGCATAATAGGCCAGCTGTCTAGGCAGAA
ACACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis