Browse Element(s) Details


OsAffx.19916.1.S1_at

Description tigr:9640.m03054
TID=OsAffx.19916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g315508/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31499NANA12+18920200..18920980NA
LOC_Os12g31510Os.53621.1.S1_at11/1112+18926126..18927207expressed protein
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein
LOC_Os12g31550OsAffx.19916.1.S1_at8/1112+18943639..18949263hypothetical protein
LOC_Os12g31560OsAffx.19917.1.S1_at11/1112+18956069..18958083Protein kinase domain containing protein
LOC_Os12g31570NANA12+18968858..18975051retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19916.1.S1_at--546--5871Chr12:18949164..18949188 (25 bp)
GAGCCGATACGCGTGCATCCAAGAA
LOC_Os12g31550
OsAffx.19916.1.S1_at--9--6091Chr12:18946732..18946835 (25 bp)
GAGTATGGACTTTCCACGTGCACGA
LOC_Os12g31550
OsAffx.19916.1.S1_at--647--4531Chr12:18946687..18946711 (25 bp)
GCGCGGCTACTACGTTTGTAACTAT
LOC_Os12g31550
OsAffx.19916.1.S1_at--83--9031Chr12:18946661..18946685 (25 bp)
TGCACACCATAACACACAACATCGA
LOC_Os12g31550
OsAffx.19916.1.S1_at--622--2291Chr12:18945930..18945954 (25 bp)
AAATGACCTCGCCAGCAGTGATATG
LOC_Os12g31550
OsAffx.19916.1.S1_at--1006--6491Chr12:18945911..18945935 (25 bp)
GATATGATCCTACGCTTGCATGACT
LOC_Os12g31550
OsAffx.19916.1.S1_at--967--6251NONE
GATGTGGATCCATGCATGATACGCA
NONE
OsAffx.19916.1.S1_at--153--711NONE
ATGATACGCAGTTTTGCCGTCGTCG
NONE
OsAffx.19916.1.S1_at--985--251NONE
ATATCCACCTGGACACTCATATGGG
NONE
OsAffx.19916.1.S1_at--472--9831Chr12:18943702..18943726 (25 bp)
TAAAGTGGGATCTGGCATTGGTGCT
LOC_Os12g31550
OsAffx.19916.1.S1_at--348--7871Chr12:18943677..18943701 (25 bp)
GGTTTCTGCGGAGGATCCAGCATCA
LOC_Os12g31550
Target Sequence 
GAGCCGATACGCGTGCATCCAAGAAGAGGAGAAGGTCAATGCGCACGGCGTGTGAGGAAGGAACATGTTTGCAAGTATAG
GGTATGGGCACGGTTCCATATAACCGTACCTGGGGTATTTAAAGACGGACTGGATGTGAGTATGGACTTTCCACGTGCAC
GACATGCACAGGGGAACAACTCGCGCGGCTACTACGTTTGTAACTATATGCACACCATAACACACAACATCGACAGTGAT
AAGGATATGGAAGAGGGGCAGCGAATTGGGAGCAAAAATGACCTCGCCAGCAGTGATATGATCCTACGCTTGCATGACTT
TGTCAATGATGATGTGGATCCATGCATGATACGCAGTTTTGCCGTCGTCGCCTCCCAGCTTGTATATCCACCTGGACACT
CATATGGGGCACCATGGTGCCCGGGCACCATGGTATCTAATGCACAAAATCACTCAAATTTTTTCAAAATTTTCAAATTG
AGTCGGTTAACTAAAGTGGGATCTGGCATTGGTGCTGGTTTCTGCGGAGGATCCAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis