Browse Element(s) Details


OsAffx.19953.6.S1_s_at

Description tigr:9640.m03296
TID=OsAffx.19953.6
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 3 - rice mitochondrion
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3407011/11Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g3393011/11Ribosomal protein S12 containing protein
LOC_Os12g3413011/11Mitochondrial ribosomal protein S3, putative
LOC_Os02g469563/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34050NANA12+20532542..20533825retrotransposon protein, putative, unclassified
LOC_Os12g34060OsAffx.19957.1.S1_at8/1112+20540298..20542028hypothetical protein
LOC_Os12g34070OsAffx.19953.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.2.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32275.1.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.6.S1_s_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.19953.7.S1_s_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32273.1.S1_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32254.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34070OsAffx.32253.1.S1_x_at11/1112+20546309..20550353Mitochondrial ribosomal protein S3, putative, expressed
LOC_Os12g34079OsAffx.32277.1.S1_x_at5/1112+20555414..20555767hypothetical protein
LOC_Os12g34090NANA12+20560445..20567178retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006120biological_processmitochondrial electron transport, NADH to ubiquinone
GO:0006412biological_processprotein biosynthesis
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005740cellular_componentmitochondrial envelope
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19953.6.S1_s_at--171--3814Chr12:20647239..20647263 (25 bp)
CTCCGGTGATGCCAGAAGTCGTTTC
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--560--7394Chr12:20647244..20647268 (25 bp)
GTGATGCCAGAAGTCGTTTCGATAT
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--834--4414Chr12:20647249..20647273 (25 bp)
GCCAGAAGTCGTTTCGATATACGAT
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--572--6514Chr12:20647264..20647288 (25 bp)
GATATACGATTTTATCCGGTTCCTA
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--88--10174Chr12:20647266..20647290 (25 bp)
TATACGATTTTATCCGGTTCCTATT
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--531--153Chr12:20647293..20647317 (25 bp)
ATTTATTATCCCTGATCTGGAAGTC
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--446--10153Chr12:20647299..20647323 (25 bp)
TATCCCTGATCTGGAAGTCACCTTT
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--409--4193Chr12:20647302..20647326 (25 bp)
CCCTGATCTGGAAGTCACCTTTTTT
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--879--10276Chr12:20647327..20647351 (25 bp)
TTTCCTTGGGCAGTACCTCCTAACA
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--11--8656Chr12:20647333..20647357 (25 bp)
TGGGCAGTACCTCCTAACAAGATTG
LOC_Os12g34130
OsAffx.19953.6.S1_s_at--63--6996Chr12:20647339..20647363 (25 bp)
GTACCTCCTAACAAGATTGATCTGT
LOC_Os12g34130
Target Sequence 
CTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCCGGTTCCTATTTTATTTATTATCCCTGATCTGGAAGTCA
CCTTTTTTTTTCCTTGGGCAGTACCTCCTAACAAGATTGATCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19953.6.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis