Browse Element(s) Details


OsAffx.20024.1.S1_at

Description tigr:9640.m03825
TID=OsAffx.20024.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3924011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20024.1.S1_at--594--8391Chr12:24121963..24121987 (25 bp)
GGCGCTGACAATCGAGTGGGCAATG
LOC_Os12g39240
OsAffx.20024.1.S1_at--418--1611Chr12:24121934..24121958 (25 bp)
AGCTGGTGACTCACCCGGAGACGAT
LOC_Os12g39240
OsAffx.20024.1.S1_at--580--8431Chr12:24121844..24121868 (25 bp)
TGGCGAACCTCCCTTACATCCAATG
LOC_Os12g39240
OsAffx.20024.1.S1_at--122--3811Chr12:24121836..24121860 (25 bp)
CTCCCTTACATCCAATGTGTCATCA
LOC_Os12g39240
OsAffx.20024.1.S1_at--939--811Chr12:24121758..24121782 (25 bp)
ATGGAGGACACCACGGTGGGCGGCT
LOC_Os12g39240
OsAffx.20024.1.S1_at--744--4571Chr12:24121723..24121747 (25 bp)
GCGCGGCACGAAGGTCCTCGTGAAC
LOC_Os12g39240
OsAffx.20024.1.S1_at--1121--1931Chr12:24121679..24121703 (25 bp)
ACGGCGATGTCTGGGACGCACCGGA
LOC_Os12g39240
OsAffx.20024.1.S1_at--953--751Chr12:24121673..24121697 (25 bp)
ATGTCTGGGACGCACCGGAGGAGTT
LOC_Os12g39240
OsAffx.20024.1.S1_at--1094--3651Chr12:24121504..24121528 (25 bp)
CTTTGATTGGGAGGTCGGTGACGAC
LOC_Os12g39240
OsAffx.20024.1.S1_at--105--6271Chr12:24121479..24121503 (25 bp)
GATGTCGTCGACATGACCGAAGGCG
LOC_Os12g39240
OsAffx.20024.1.S1_at--742--8711Chr12:24121477..24121501 (25 bp)
TGTCGTCGACATGACCGAAGGCGGC
LOC_Os12g39240
Target Sequence 
GGCGCTGACAATCGAGTGGGCAATGGCGCAGCTGGTGACTCACCCGGAGACGATGAAGAAGGCGAGGGCGGAGATAGACG
CCAACGTCGGCACGGCGCGGCTGGTGGAGGAGGCCGACATGGCGAACCTCCCTTACATCCAATGTGTCATCAAGGAGACG
CTCCGGCTCCGCACCGCCGGCCCGGTGATCCCGGCGCACGAGGCCATGGAGGACACCACGGTGGGCGGCTTCCGCGTCGC
GCGCGGCACGAAGGTCCTCGTGAACGCGTGGGCGATCCACCGCGACGGCGATGTCTGGGACGCACCGGAGGAGTTCAGGC
CGGAGCGGTTCGTGGACAGCGACGCCGGCGGCGCGGTCACCGCGCCCATGATGCCGTTCGGGCTCGGCCGGCGGCGGTGC
CCCGGGGAGGGGCTCGCCGTGCGCGTCGTCGGCGTGTCGGTGGCGGCGCTCGTGCAGTGCTTTGATTGGGAGGTCGGTGA
CGACGATGTCGTCGACATGACCGAAGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20024.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis