Browse Element(s) Details


OsAffx.20055.1.S1_at

Description tigr:9640.m03974
TID=OsAffx.20055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4063011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40590Os.55414.1.S1_at11/1112+25082483..25086214Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os12g40600Os.26886.6.S1_s_at10/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40600Os.26886.2.S1_s_at10/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40600OsAffx.16467.1.S1_at5/1112+25095558..25098312transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40610Os.26886.1.S1_x_at7/1112+25100961..25104276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40610Os.26886.3.S1_x_at5/1112+25100961..25104276transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40619NANA12+25105856..25106098hypothetical protein
LOC_Os12g40630OsAffx.20055.1.S1_at11/1112+25109231..25114650Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g40640NANA12+25116265..25120396hypothetical protein
LOC_Os12g40650Os.46500.2.S1_at3/1112+25135529..25138184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40650Os.46500.1.S1_at1/1112+25135529..25138184transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20055.1.S1_at--427--7991Chr12:25109617..25109641 (25 bp)
GGAGGACCAGGTTCCGACAGACGAA
LOC_Os12g40630
OsAffx.20055.1.S1_at--435--2051Chr12:25110920..25110944 (25 bp)
AAACGAGAACCTGAAGACCCTGCAA
LOC_Os12g40630
OsAffx.20055.1.S1_at--255--2491Chr12:25110943..25110967 (25 bp)
AACAGCTCGTTCCAGTTTGCGACAA
LOC_Os12g40630
OsAffx.20055.1.S1_at--546--5611Chr12:25111549..25111569 (21 bp)
GACAAGTCCAATAACCAGGCCTCAA
LOC_Os12g40630
OsAffx.20055.1.S1_at--750--871Chr12:25111802..25111826 (25 bp)
AGGCCATGTCAGTTGGATGCAGCAT
LOC_Os12g40630
OsAffx.20055.1.S1_at--363--5391Chr12:25111837..25111861 (25 bp)
GAAGCAGCAGGAGTGACGTGCCCCT
LOC_Os12g40630
OsAffx.20055.1.S1_at--1121--3371Chr12:25113650..25113674 (25 bp)
CAGCGCCTTGCTGGTTATCGTGGAG
LOC_Os12g40630
OsAffx.20055.1.S1_at--106--7991Chr12:25113695..25113719 (25 bp)
GGATGCAACTGCTAGATCTACCTCT
LOC_Os12g40630
OsAffx.20055.1.S1_at--24--1971Chr12:25113758..25113782 (25 bp)
ACTCATTGAAAAGCTCCTCCAGGTG
LOC_Os12g40630
OsAffx.20055.1.S1_at--937--3371Chr12:25114340..25114364 (25 bp)
CAGCCTTACATGCTGTCGCTTAAGA
LOC_Os12g40630
OsAffx.20055.1.S1_at--143--9751Chr12:25114360..25114384 (25 bp)
TAAGACGTCCGTCCGCGAAAATAAT
LOC_Os12g40630
Target Sequence 
GGAGGACCAGGTTCCGACAGACGAAGGGATATGCGTCATGGAGAAACGAAGGTGCAAGATAAACGAGAACCTGAAGACCC
TGCAACAGCTCGTTCCAGTTTGCGACAAGTCCAATAACCAGGCCTCAACGCTGGACAAAACCATCCGCTACATGAAGTCA
CTGCAGCAGCATGCCCAGGCCATGTCAGTTGGATGCAGCATGAAGACGGCAGAAGCAGCAGGAGTGACGTGCCCCTTCCT
TCCACCGCCGCCAAGCAGCGCCTTGCTGGTTATCGTGGAGGAGGGTCCCACCAGACCCTGGGATGCAACTGCTAGATCTA
CCTCTGCCGCTGCTACCTCTTTTGACCACCACCACCATGGCGCACTCATTGAAAAGCTCCTCCAGGTGGTGCAGCCTTAC
ATGCTGTCGCTTAAGACGTCCGTCCGCGAAAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis