Browse Element(s) Details


OsAffx.20076.1.S1_at

Description tigr:9640.m04062
TID=OsAffx.20076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4147011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass
LOC_Os12g41450Os.54788.1.S1_at11/1112+25644266..25646033F-box domain containing protein, expressed
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20076.1.S1_at--944--7751Chr12:25658772..25658796 (25 bp)
GGTGTTGATCGTCCCACAGATGATG
LOC_Os12g41470
OsAffx.20076.1.S1_at--565--7591Chr12:25658809..25658833 (25 bp)
GGGCAACTAAAGACCATTTGGGTGA
LOC_Os12g41470
OsAffx.20076.1.S1_at--287--7071Chr12:25658847..25658871 (25 bp)
GTAAGGACCACAACAGATAGCGAAG
LOC_Os12g41470
OsAffx.20076.1.S1_at--100--5611Chr12:25658877..25658901 (25 bp)
GACAAGACCATAGAATATCCCGAGA
LOC_Os12g41470
OsAffx.20076.1.S1_at--66--5231Chr12:25658889..25658913 (25 bp)
GAATATCCCGAGATGGCAACCAGTA
LOC_Os12g41470
OsAffx.20076.1.S1_at--1014--6231Chr12:25658900..25658924 (25 bp)
GATGGCAACCAGTAGCGATGAAGAT
LOC_Os12g41470
OsAffx.20076.1.S1_at--485--8271Chr12:25658945..25658969 (25 bp)
GGCAGGGATGTCATCTGATAGCGAA
LOC_Os12g41470
OsAffx.20076.1.S1_at--417--6491Chr12:25658961..25658985 (25 bp)
GATAGCGAAGATGACTCCTCTTACA
LOC_Os12g41470
OsAffx.20076.1.S1_at--244--31Chr12:25659017..25659041 (25 bp)
ATTGGAAGATAGCAGTCACCGTGAT
LOC_Os12g41470
OsAffx.20076.1.S1_at--693--7331Chr12:25659070..25659094 (25 bp)
GGAAAAGGACTTATCGTATTGCAGA
LOC_Os12g41470
OsAffx.20076.1.S1_at--935--6851Chr12:25659219..25659243 (25 bp)
GTTTGGGCTCAAGTTGCAGTATTCT
LOC_Os12g41470
Target Sequence 
GGTGTTGATCGTCCCACAGATGATGAAAAAAATGATGGGGCAACTAAAGACCATTTGGGTGATTGTAAAGAAAATGTAAG
GACCACAACAGATAGCGAAGAACACGACAAGACCATAGAATATCCCGAGATGGCAACCAGTAGCGATGAAGATGCATCGG
ATAGTGAAGAAGAGGCAGGGATGTCATCTGATAGCGAAGATGACTCCTCTTACAATCCCCCTAAAATTGCAAATACTGCG
TTTATATTGGAAGATAGCAGTCACCGTGATGGTTCTATATACAAGGGCAATAGCGAGTGGAAAAGGACTTATCGTATTGC
AGATCTTGAGGAGAGTTTGGGCTCAAGTTGCAGTATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis