Browse Element(s) Details


OsAffx.20078.1.S1_at

Description tigr:9640.m04067
TID=OsAffx.20078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4152010/11receptor-like protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41460OsAffx.32135.1.S1_at11/1112+25654058..25657610hypothetical protein
LOC_Os12g41460Os.54788.1.S1_at2/1112+25654058..25657610hypothetical protein
LOC_Os12g41470OsAffx.20076.1.S1_at11/1112+25658742..25659274hypothetical protein
LOC_Os12g41480NANA12+25661287..25661855hypothetical protein
LOC_Os12g41490Os.9468.2.A1_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490Os.9468.2.A2_at11/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41490OsAffx.20077.1.S1_x_at1/1112+25666158..25668949Protein kinase domain containing protein, expressed
LOC_Os12g41500Os.9468.1.S1_at11/1112+25668463..25672910thiosulfate sulfurtransferase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_x_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41510OsAffx.20077.1.S1_at11/1112+25677022..25679078lectin protein kinase, putative, expressed
LOC_Os12g41520OsAffx.20078.1.S1_at10/1112+25679616..25680740receptor-like protein kinase, putative
LOC_Os12g41530OsAffx.20079.1.S1_x_at1/1112+25685019..25687067Protein kinase domain containing protein
LOC_Os12g41540OsAffx.20079.1.S1_x_at11/1112+25689204..25691635lectin protein kinase, putative, expressed
LOC_Os12g41550Os.55384.1.S1_s_at11/1112+25692632..25693149expressed protein
LOC_Os12g41560Os.49172.1.S1_at11/1112+25694108..25695760expressed protein
LOC_Os12g41570OsAffx.7856.1.S1_at11/1112+25696107..25696979hypothetical protein
LOC_Os12g41580OsAffx.32137.1.S1_at11/1112+25702659..25704244hypothetical protein
LOC_Os12g41590Os.9887.1.S1_at11/1112+25704406..25707500oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0031225cellular_componentanchored to membrane
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20078.1.S1_at--1148--1091Chr12:25680670..25680694 (25 bp)
AGTGGTTCAGGACAGACTGCTCGAC
LOC_Os12g41520
OsAffx.20078.1.S1_at--211--9331Chr12:25680650..25680674 (25 bp)
TCGACCACCGGTAACTATACCAGGG
LOC_Os12g41520
OsAffx.20078.1.S1_at--781--7051Chr12:25680469..25680493 (25 bp)
GTAAGGAATGCCTTGCCCGGGCGCC
LOC_Os12g41520
OsAffx.20078.1.S1_at--592--7071Chr12:25680437..25680461 (25 bp)
GTCAGACAGGAGTGCCCCGGAAGCC
LOC_Os12g41520
OsAffx.20078.1.S1_at--644--131Chr12:25680315..25680339 (25 bp)
ATTAGCCGGTGACCAAATCGTCGTC
LOC_Os12g41520
OsAffx.20078.1.S1_at--1085--7191Chr12:25680296..25680320 (25 bp)
GTCGTCCAGAACGTGACCACCATGA
LOC_Os12g41520
OsAffx.20078.1.S1_at--511--5511Chr12:25680273..25680297 (25 bp)
GAACAACACGCGATGGCAGTTTCTG
LOC_Os12g41520
OsAffx.20078.1.S1_at--344--8271Chr12:25680259..25680283 (25 bp)
GGCAGTTTCTGAACAAGCTAGCGGA
LOC_Os12g41520
OsAffx.20078.1.S1_at--606--4491Chr12:25680230..25680254 (25 bp)
GCCGGTGACAACACGCTGAGGATAG
LOC_Os12g41520
OsAffx.20078.1.S1_at--298--7951NONE
GGATAGACAACCGTAGCGAGCCCTA
NONE
OsAffx.20078.1.S1_at--402--4611Chr12:25680066..25680220 (25 bp)
GCGAGCCCTATATTTATAGCGCCAT
LOC_Os12g41520
Target Sequence 
AGTGGTTCAGGACAGACTGCTCGACCACCGGTAACTATACCAGGGGCAGCCAGTTCGAGAAGAACCTCAACCAGCTCCTC
TCCAGCCTCTCTGCCGGCGCCATCGCCGGCGACTGGTTCAACACCAGCTCGGTCGGGACGGGTCCCGACCAGGCGTTCGG
CCTCATCATGTGCTACGCCGACGCCGGCGATGCGACGAGGTGTAAGGAATGCCTTGCCCGGGCGCCCGCTGGGGTCAGAC
AGGAGTGCCCCGGAAGCCGGGCGGTGACCGCCAGCAACGACGCCTGCCTCCTCCGCTACTCCGACAAGCCTTTCTTCTCC
GCCTACGACGCCAGCACCAACATCAGCTACACAAAATTAGCCGGTGACCAAATCGTCGTCCAGAACGTGACCACCATGAA
CAACACGCGATGGCAGTTTCTGAACAAGCTAGCGGAGAGGGCCGGTGACAACACGCTGAGGATAGACAACCGTAGCGAGC
CCTATATTTATAGCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis